Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0469 ATGGCGCTAACAGGAGTGCAACTTCTGATTGAAGATACTCATGTGGTGATTGACAATGGAATATTAAAGGTGACCTTGTCAAATCCTGAGGGAATAGTAACAGGAATAGAATATAATGGCATCGACAACTTGCTTGAATATCAAAACGAAGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCACCGACAAGTCCCGGAATATTTGACGTGATAAGGGGAAGCAATTTCAACGTGATAGTGGAAAATGAGGAACAAGTTGAGTTATCCTTCACAAGAACGTGGGATGCTTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGTCGTGGTAGTTCTGGATTCTACTCCTATGCTCTATACGAACACTTAGATGAGTGGCCCGCTTTCAATCTCGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCAGATAATATACAAAGGAACATGCCTCTTCCAGGTGACCGAATCCCACCTAGAGGCCAACCCCTTGCTTATCCTGAGGCTGTTCTTCTTGTTAATCCTATCGAGCCTGAATTGAAAGGAGAGGTGGACGACAAATACCAATATTCATGTGACAACAAAGACAGCAAGGTGCATGGATGGATTTGCACTGAGCCGGCGGTTGGATTCTGGCTAATAACGCCCAGCAACGAATTCCGATCCGGTGGACCCCTCAAACAGAACCTAACTTCTCATGTGGGACCCACCACTCTTGCTGTGTTTCTAAGCGCTCACTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGCGAGGCATGGAAGAAAGTGTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGGCGAGAACCTATATAATACGCTATGGGAAGACGCTAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGGGGCAATGTCAATGGTAGGCTACTCGTCCGAGACAGGTATATTAGAGATGACGATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCACCAGGAGACGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGATGGATATTTCTCCATCGGCAATATACGCCCTGGTGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGTGGTTATGAACATAACTCCGGGCTGTGACATAGTCGTAGGTGATCTTGTGTATGAACCTCCAAGAGAAGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCCAATCCCAAATATGTCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAGTACGGGTTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTATACAGTTGGTGTTAGCGACTACAGCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATTCATATCAAGGAACCACATGGCAAATCAAGTTTAAACTGGACAAAGTGAACAAGAGAAGTGCCTATAAACTGCGCATTGCTCTGGCATCAACAACGTTTTCTGAACTACAGGTTCGAGTTAATGATCCAAAAGCAGCTCGTCCTGTATTTTCAAGTGGATTGATAGGGAGGGATAACTCCATTGCTAGGCATGGCATTCATGGGCTCTATTGGCTTTTCACTGTCGACATATGGGGTCCTCGACTCGTTGAAGGAGATAATACCATCTTTTTGACTCAGTCAAGAGGCAATGGCCCATTTCAGGCCATTCTGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTACTTCCAGCGACAAGATTTACGATTATGACCTGTTTTTGATTTCTGACAGAATAATTCGGAAATAA 1971 0.4338 MALTGVQLLIEDTHVVIDNGILKVTLSNPEGIVTGIEYNGIDNLLEYQNEESNRGYWDLVWSSPTSPGIFDVIRGSNFNVIVENEEQVELSFTRTWDASLEGKLVPLNIDKRFIMCRGSSGFYSYALYEHLDEWPAFNLDETRIAFKLSREKFHYMAMADNIQRNMPLPGDRIPPRGQPLAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSKVHGWICTEPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNGENLYNTLWEDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIRDDDISAKGAYVGLAPPGDAGSWQRECKNYQFWAKADDDGYFSIGNIRPGDYNLYAWVPGFIGDYRYDVVMNITPGCDIVVGDLVYEPPREGPTLWEIGIPDRTAAEFYVPDPNPKYVNKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYSKDWFFAQVTRKKDDNSYQGTTWQIKFKLDKVNKRSAYKLRIALASTTFSELQVRVNDPKAARPVFSSGLIGRDNSIARHGIHGLYWLFTVDIWGPRLVEGDNTIFLTQSRGNGPFQAILYDYIRLEGPPSSTSSDKIYDYDLFLISDRIIRK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0469 656 SUPERFAMILY Galactose mutarotase-like 12 304 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele04g0469 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 633 - -
Lele04g0469 656 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Lele04g0469 656 Gene3D - 331 420 - -
Lele04g0469 656 CDD RGL4_M 332 431 IPR029413 -
Lele04g0469 656 Gene3D - 439 630 - -
Lele04g0469 656 CDD RGL4_N 11 293 - -
Lele04g0469 656 SUPERFAMILY Galactose-binding domain-like 439 630 IPR008979 -
Lele04g0469 656 Gene3D - 7 311 IPR014718 GO:0030246
Lele04g0469 656 Pfam Rhamnogalacturonate lyase family 10 200 IPR010325 -
Lele04g0469 656 SUPERFAMILY Starch-binding domain-like 351 417 IPR013784 GO:0030246
Lele04g0469 656 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Lele04g0469 656 CDD RGL4_C 443 630 - -
Lele04g0469 656 FunFam Rhamnogalacturonate lyase B 329 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0469 Lele-ChrLele04 2807104 2810925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0469 1 632 Polysaccharide Lyase AT1G09890 71.564 0.0 954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0469 04 2807104 2810925 Lele04g0469 04 2807104 2810925 ECH
Lele01g0464 01 2728324 2732397 Lele04g0469 04 2807104 2810925 hybridization
Lele02g0452 02 2688188 2697677 Lele04g0469 04 2807104 2810925 hybridization