Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0458 ATGTACGGACAACTCCCATCAATGGATGTCACCAATCGGATCAGCACAGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGACAATCACAACATCCATTACGAAACGCAAGCCGTCGAAGATGGCAGTGGTGGAGTCGGGGGCATAGTGGAGGATGTGAACTCCGATACCATATACGTTTCCGGAAGTGGTTCTGAATTATCCATCCCGCACGAGGATCCTAGCCAACTTACGTTGTCATTTCGTGGCCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTATTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATAGCCCCTCAAAATGAGAGGGGTGCGTTGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGAAAAGAGCGCTGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTCGCTCTCAGAATGCACCGTAATAAGGGTCAATTTACATCTTCTAAGAAGCAAGATGGAGCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAATCAATCAGAAACCTCGTGCTCACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGAGGCGTGGGCCATCAGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTGCACCAGCTGAGCAGGTTGAACGGGATGATTCACATTCTCGGACTGCTAACCCTGCATGTAACAATCTTGGGGCTTTCCCTGATGATGATAAGCCGGGCATAGATGATCATTGA 885 0.4757 MYGQLPSMDVTNRISTGEDEDGAGIGAESIDNHNIHYETQAVEDGSGGVGGIVEDVNSDTIYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPQNERGALDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSLGTVQESGQDDNQSETSCSHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLAPAEQVERDDSHSRTANPACNNLGAFPDDDKPGIDDH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0458 294 PANTHER GATA TRANSCRIPTION FACTOR 28 25 264 IPR045280 GO:0006355
Lele04g0458 294 MobiDBLite consensus disorder prediction 251 271 - -
Lele04g0458 294 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Lele04g0458 294 Pfam tify domain 76 107 IPR010399 -
Lele04g0458 294 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Lele04g0458 294 MobiDBLite consensus disorder prediction 173 227 - -
Lele04g0458 294 MobiDBLite consensus disorder prediction 1 27 - -
Lele04g0458 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 256 - -
Lele04g0458 294 MobiDBLite consensus disorder prediction 251 294 - -
Lele04g0458 294 SMART tify_2 73 108 IPR010399 -
Lele04g0458 294 Pfam CCT motif 140 182 IPR010402 GO:0005515
Lele04g0458 294 MobiDBLite consensus disorder prediction 181 221 - -
Lele04g0458 294 ProSiteProfiles GATA-type zinc finger domain profile. 202 261 IPR000679 GO:0006355|GO:0043565
Lele04g0458 294 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Lele04g0458 294 Gene3D - 198 258 IPR013088 GO:0006355|GO:0008270
Lele04g0458 294 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Lele04g0458 294 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Lele04g0458 294 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0458 Lele-ChrLele04 2706648 2711008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0458 67 269 Tify Gene Family AT4G24470 65.700 7.03e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele04g0458 CCT 3.7e-15 CL0281