Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0429 ATGAAAGGTGGGAATGGGAGGGATGGGCCACAGAGAGAGAGAGATGGTAAACCATGTTCTTATACTTCACTTAATTGTGTGGATGTTGATAGTAGTATGGAACAAGATAGGAAGGTGGTAGTTAATAAGAGGAGGGAGAATGGAATGGAGATGGATGAAGATGAGGAAGTTGGCCGGGGTCGGAGCCCCAAGTGGGAAACAATGATAACAAGTTTCATGTTGGACAGGATTATGGAATTTGAGGAGCAAGATCGGGAGCACGAAGAGGCAGAGGAAGAAATGGGGATCCCCGTGCCCCCGACGAGTTTCGACTCTCCTCGCTCCAAAACAGGTGCTGCCTTCGGAACCGAGGGAGGTGCATCCGCCATGACCGGGGGAAGGAAAGGACGTCCAACGGGAACTGTCAGGTACAGAGAGTGTCAGAAGAATCACGCCGTCAGCATCGGCGGCCACGCCGTTGACGGTTGCTGTGAGTTTCTGACGGCGGGTGAGGAAGGCACGCTCGACGCTCTCAAATGCGCCGCCTGCAACTGTCATCGCAACTTCCACCGCAAGGAGATCGAGGGAGAAACTAGCTCCTTTCACCTGCCGCAGCCGCACCACCCCCAGTACCCCCATCAATTTCCCCCTTACTACCGTGGGCCGCCGCCGCCGCCAGGCACAGGATACCTCCACCACCACCTGACAAATCCCGCCATGGCACATCACCTGCCTCTGGCTCTACCTGCAGCGGCATCCGGCGGAGGACTGAGTAGAGAAGAGGAAGACATGTCCAATCCGAGTAGCAGCGGAGGCGGAGGTTTCGGCGGAGGAGGGAGCGGTGGGGAAAGGAAGAAACGGTTTCGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAAAAGGTGGGGTGGAGAATCCAGAAGCATGACGAAGCAGCGGTGGAGCAATTCTGTGCGGAGACTGGCGTCAAGAGACAGGTACTCAAGGTGTGGATGCATAATAACAAAAACACTCTCGGTAAGAAGCCCTAA 1026 0.5517 MKGGNGRDGPQRERDGKPCSYTSLNCVDVDSSMEQDRKVVVNKRRENGMEMDEDEEVGRGRSPKWETMITSFMLDRIMEFEEQDREHEEAEEEMGIPVPPTSFDSPRSKTGAAFGTEGGASAMTGGRKGRPTGTVRYRECQKNHAVSIGGHAVDGCCEFLTAGEEGTLDALKCAACNCHRNFHRKEIEGETSSFHLPQPHHPQYPHQFPPYYRGPPPPPGTGYLHHHLTNPAMAHHLPLALPAAASGGGLSREEEDMSNPSSSGGGGFGGGGSGGERKKRFRTKFTQEQKEKMLAFSEKVGWRIQKHDEAAVEQFCAETGVKRQVLKVWMHNNKNTLGKKP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0429 341 SUPERFAMILY Homeodomain-like 264 339 IPR009057 -
Lele04g0429 341 Pfam ZF-HD protein dimerisation region 135 187 IPR006456 -
Lele04g0429 341 MobiDBLite consensus disorder prediction 1 23 - -
Lele04g0429 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 137 186 IPR006456 -
Lele04g0429 341 MobiDBLite consensus disorder prediction 202 222 - -
Lele04g0429 341 MobiDBLite consensus disorder prediction 1 15 - -
Lele04g0429 341 MobiDBLite consensus disorder prediction 85 109 - -
Lele04g0429 341 MobiDBLite consensus disorder prediction 244 278 - -
Lele04g0429 341 Gene3D - 267 338 - -
Lele04g0429 341 MobiDBLite consensus disorder prediction 192 226 - -
Lele04g0429 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 113 337 - -
Lele04g0429 341 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 278 335 IPR006455 -
Lele04g0429 341 FunFam Zinc-finger homeodomain protein 2 271 339 - -
Lele04g0429 341 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 136 187 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0429 Lele-ChrLele04 2532293 2535917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0429 78 337 ZF-HD Transcription Factor Family AT4G24660 52.107 9.92e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele04g0429 ZF-HD_dimer 4.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0429 04 2532293 2535917 Lele04g0429 04 2532293 2535917 ECH
Lele01g0424 01 2480028 2485699 Lele04g0429 04 2532293 2535917 hybridization
Lele02g0421 02 2430512 2434647 Lele04g0429 04 2532293 2535917 hybridization