Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0420 ATGGCCCTAGAGGCTGTACTTTTCTCACAGGATCCCTTCCCGTATAGTTGCTGCAAGGACTCGTACTCCTTCGCCGCAGCTTGGAACCCCGACGACCATGGCTTCCATGCAGAAGAGGAGAGATCCTCCGTCGGAGTACTCATCAACAGTAACATAGAACCCAGGCATGTCCATGCAACTTGGGATGCTAACTCTTCTCCAGAGGCCTGCACCGACCGCCGATCCCTGATCTCCCCTGCTCCCTCGGGTAGGCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGACCTGGAGAACCAGAGGATGACTCACATTGCGGTGGAGCGCAATCGGCGGAGACAGATGAATGACTACCTGGCGGTGCTCCGTTCCTTGATGCCTCCATCTTACGTTCAAAGGGGGGACCAAGCGTCTATAATAGGAGGCGCTATTAACTTTGTGAAGGAGCTCGAACAGCTACTGCTGTCAATGGAGGGACGAAAGAAGAAGACGAAGCAGCAAGATCAAGAGAGTGGGACGTGTAGCTCGCCCTTCGCCGAGTTCTTCACGTTCCCGCAGTATTCCACTCATGCAAATCACGGCAATACCAGCTCCCAGCAATGGGCCGTCGCTGACATTGAAGTCACCATGGTCGACACGCACGCCAACCTCAAGATACTCTCCAAGAAACGTTCCGGCCAGCTCACCAAGATCGTCGTCGGCCTTCAAGCTCTCAGGCTCACCGTTCTCCACCTCAACGCTACCACTCATGACGACATGGTCCTCTACTCTGCCAGCGTCAAGCTTGAAGATGGATGTGATCTGAATACGGTGGATGAAATCGCTGCTGCCGTGAATCAACTATTGCGCAGAATCCAGGAGGAATCGCCTTTCTGCTGA 885 0.5435 MALEAVLFSQDPFPYSCCKDSYSFAAAWNPDDHGFHAEEERSSVGVLINSNIEPRHVHATWDANSSPEACTDRRSLISPAPSGRRKRRRTKSAKNKEDLENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLLSMEGRKKKTKQQDQESGTCSSPFAEFFTFPQYSTHANHGNTSSQQWAVADIEVTMVDTHANLKILSKKRSGQLTKIVVGLQALRLTVLHLNATTHDDMVLYSASVKLEDGCDLNTVDEIAAAVNQLLRRIQEESPFC 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0420 294 CDD bHLH_AtFAMA_like 104 173 - -
Lele04g0420 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Lele04g0420 294 Coils Coil 149 169 - -
Lele04g0420 294 MobiDBLite consensus disorder prediction 63 102 - -
Lele04g0420 294 PANTHER MAX DIMERIZATION, MAD 70 290 - -
Lele04g0420 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 172 IPR036638 GO:0046983
Lele04g0420 294 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Lele04g0420 294 Gene3D - 90 170 IPR036638 GO:0046983
Lele04g0420 294 SMART finulus 107 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0420 Lele-ChrLele04 2488547 2489758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0420 1 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.498 4.90e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele04g0420 HLH 3.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0420 04 2488547 2489758 Lele04g0420 04 2488547 2489758 ECH
Lele01g0417 01 2434873 2436067 Lele04g0420 04 2488547 2489758 hybridization
Lele02g0412 02 2392493 2398829 Lele04g0420 04 2488547 2489758 hybridization