Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0419 ATGCACAGAAAGCTCTTCCCTGCAACCACAACAAATCAAACCCAAGAGTGTTCTGATTTTTGTGACCCAGCTTGCCCTTACAACTGCTACTCTTACCCAGTCCACTACTTGCCGCCGCCGCCCGTTTTTTCTCCAAGTAATCAGATCACGGCCTACTTGGCCATCGTTGCTTCACTATTCACCGTCATATTTGTTCTTTTTGGTTTCTACGTTCTCAAAGTGAAGTGGTACTCCGATTGGTGTGGATGGAGACGCAATGGATCCTTTACCACCCAATCAGACAGCCTCGAGGATGAGTTTATTGATGAGAATCAAGTTGATCACCCTCTCTGGTTGATCACCACCATTGGTTTAGAACAGTCCATCATAAACTCCATTACGGTTTGTAAGTACAAAAAGGGCGAGGGATTGATCGAGGGAACTGAGTGTTCAGTGTGCCTGAATGAATTCCGGGAGGACGAAACCTTGAGACTCTTGCCGAAGTGCAACCACGCCTTCCACGTCCTCTGCATCGACACGTGGTTGCGGTCTCATATCAGTTGCCCTCTTTGTCGTGCCGGAATTGTCCCTAACAATGCCAGTTCCGATGCAGCCATGTTAAACTTGAGTTCGGTGGAGGAAAACTCTAACACAGTGGTAAGAAATGAAGGCGAACAAGTTGAGCGGAATGGTGGGGAATCCGAAAACGGAGAGGGAACAGGAGAAGCAGGGGAAGCCGAAGAGTTCGCTCATGAATCAATGTCGAAGAATGAACAGCTTGTAGATGAAATAGGAAAAGGAACGAGTTATGTATCGATGGATTGTTGCGTTGATCATGTAAAGGAAGAGACTGAAGGGGACAGGGCGAATGTTCTGAAGAAAGGCGGTGAATATTCAACACTCTTTAAACCAGCGCGTGGCTCTTCAATTGCACGGTGTCTTCGCGTAACCCCTATTTCGATGAAGAGGTCAGCCTCCTGCAGCGGCAGGATTGTATCGACGAGAGGCCACAAGAGTCTTAATTCAAGTCTTCACCGCTAG 1020 0.4775 MHRKLFPATTTNQTQECSDFCDPACPYNCYSYPVHYLPPPPVFSPSNQITAYLAIVASLFTVIFVLFGFYVLKVKWYSDWCGWRRNGSFTTQSDSLEDEFIDENQVDHPLWLITTIGLEQSIINSITVCKYKKGEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHVLCIDTWLRSHISCPLCRAGIVPNNASSDAAMLNLSSVEENSNTVVRNEGEQVERNGGESENGEGTGEAGEAEEFAHESMSKNEQLVDEIGKGTSYVSMDCCVDHVKEETEGDRANVLKKGGEYSTLFKPARGSSIARCLRVTPISMKRSASCSGRIVSTRGHKSLNSSLHR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0419 339 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Lele04g0419 339 SMART ring_2 143 184 IPR001841 -
Lele04g0419 339 MobiDBLite consensus disorder prediction 237 251 - -
Lele04g0419 339 MobiDBLite consensus disorder prediction 208 251 - -
Lele04g0419 339 FunFam RING-H2 finger protein ATL54 118 191 - -
Lele04g0419 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Lele04g0419 339 Pfam Ring finger domain 142 185 IPR001841 -
Lele04g0419 339 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 50 193 IPR044675 -
Lele04g0419 339 SUPERFAMILY RING/U-box 136 191 - -
Lele04g0419 339 CDD mRING-H2-C3H2C2D_ZSWM2 142 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0419 Lele-ChrLele04 2482224 2483243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0419 2 189 C3H Transcription Factor Family AT1G72220 48.624 1.04e-65 211