LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0418	ATGGCGCTATTTCGTATCTCCGGCGTCCCGTCAACAGCTAACCTCTCCGCAGAACACCAACTTCTCCCGCTCTCTTCCCTCCATAATTTTCCCCATCCTTCCATCGGCAATCTCTCGTTTTGTCGCTCGCCTTCCTGGTTTAATTTTCTACGTCTGTCCCTTGCGCATCCCTCAGACTATACAACCAAGGAAATTTCTCATTCTCTACAAATATTTGCCACTACATCCCAAGAACAAGCGCTTACTTCCTCTCCTTCAGATGTTACCGATGACGGCCAACCAACCGAGGCACAAGCTGAAGAATTTTCTCGAACCAGGTTGCTTGCTGAGAACCTACCTTGGACTTGCACTCCTGAAGACGTTCGTTCTTTGTTCGAGAGGCATGGAAGAGTCCTAGACGTTGAGTTATTGATGTATAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGTTCGGAAGAAGAGGCTCTTGCAGCTTTGAATAGTCTGGAATCGTATGAATATGATGGGCGTACACTGGGACTCGCATATGCTAGGCCGAAAAAGAAGAAAGATCCACCTCCCGTGCAGCTGAAGACAGTAACATTTAACATATTTGTTGCAAATTTGTCCTATGAAGCGAGAGCTAAAGATCTCAAGGAGTTTTTTGATTCAGGAAGCGGTAGTGTTGTTTCTGCCGAGGTCATATTTCATGACAACCCTAGAAAGTCTGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGAGGCTGCCCTTACTGAGTTTCAAGGGAAGAGTTTTATGGGAAGGCCAATCAGGGTGGCACGTAGTAAGCAGTTTGTTAAACGACCGGTAGAGGAGAGTGCAAGGTCTGAAGATACATCTTCCGAGACCAGCGTGAATGGGGTAGAAGCAGATGAAGCTGAATGA	924	0.46	MALFRISGVPSTANLSAEHQLLPLSSLHNFPHPSIGNLSFCRSPSWFNFLRLSLAHPSDYTTKEISHSLQIFATTSQEQALTSSPSDVTDDGQPTEAQAEEFSRTRLLAENLPWTCTPEDVRSLFERHGRVLDVELLMYNKTRNRGLAFVEMGSEEEALAALNSLESYEYDGRTLGLAYARPKKKKDPPPVQLKTVTFNIFVANLSYEARAKDLKEFFDSGSGSVVSAEVIFHDNPRKSAGYGFVSFKSKKEAEAALTEFQGKSFMGRPIRVARSKQFVKRPVEESARSEDTSSETSVNGVEADEAE	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0418	307	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	175	IPR000504	GO:0003723
	Lele04g0418	307	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	200	271	IPR000504	GO:0003723
	Lele04g0418	307	PANTHER	OS02G0815200 PROTEIN	49	276	-	-
	Lele04g0418	307	SUPERFAMILY	RNA-binding domain, RBD	193	281	IPR035979	GO:0003676
	Lele04g0418	307	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	105	182	IPR000504	GO:0003723
	Lele04g0418	307	MobiDBLite	consensus disorder prediction	80	100	-	-
	Lele04g0418	307	Gene3D	-	189	303	IPR012677	-
	Lele04g0418	307	Gene3D	-	62	188	IPR012677	-
	Lele04g0418	307	SUPERFAMILY	RNA-binding domain, RBD	87	190	IPR035979	GO:0003676
	Lele04g0418	307	SMART	rrm1_1	199	273	IPR000504	GO:0003723
	Lele04g0418	307	SMART	rrm1_1	106	178	IPR000504	GO:0003723
	Lele04g0418	307	CDD	RRM_SF	200	272	-	-
	Lele04g0418	307	MobiDBLite	consensus disorder prediction	278	307	-	-
	Lele04g0418	307	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	198	277	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0418	Lele-ChrLele04	2478490	2480719	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0418	105	277	Eukaryotic Initiation Factors Gene Family	AT3G16380	30.978	9.52e-15	72.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele04g0418	04	2478490	2480719	Lele25g0383	25	2331439	2333437	CCT
	Lele04g0418	04	2478490	2480719	Lele26g0399	26	2407595	2409186	CCT
	Lele04g0418	04	2478490	2480719	Lele27g1700	27	22378399	22380431	CCT
	Lele04g0418	04	2478490	2480719	Lele28g0393	28	2413806	2415460	CCT
	Lele04g0418	04	2478490	2480719	Lele04g0418	04	2478490	2480719	ECH
	Lele01g0414	01	2421629	2423326	Lele04g0418	04	2478490	2480719	hybridization
	Lele02g0410	02	2383300	2384995	Lele04g0418	04	2478490	2480719	hybridization