Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0408 ATGGAACCTTCTACGGTGCAGACGGCGGGAGGACCCCGAGATCGCAGAGCTGATGCTCTTGGAGACTTTCGAGTCCTCCCCGATGAAATCCTTTGCAGCATTTTAGAGGAACTCACTCCTCGAGATGTTGCTCGCCTCGCTTGCGTTAGCAGCGTAATGGACATACTGTGCAATGAAGAACCACTATGGATGCGTTTATGTCTTAAAGGAGCGTCTGGTTTACTTCAGTACAAAAGCTCTTGGAAGAAAACTGCTCTGCATCGTGAGAATTTGCCAGAAAAATACATTGAGTGTAACAGAGGATTTCTGCATTTTGATGGATTTAATTCGTTATATTTGTATAGAAGATTATACAGGTCTCATACCAAGTTGGATACATTTTATGTGGATAATGGAAATGTGGAAAGAAGAAAAGATGTCTCTCTAGAAGACTTCCGTGATGAGTATGATGGGAAGAAACCGGTAATGCTTACCGGATTGGCTGATGCGTGGCCTGCGAGGCATAAATGGGCAATTGATCATCTGTTGCTAAACTATGGAGATGTAGCATTTAAGATTTCCCAAAGGAGTTCTCGGAAGATCTTGATGAATTTTAAGGATTATGTTTCATACATGAAACTTCAGCATGATGAAGATCCGTTGTACATTTTTGATGAAAAGTTTGGTGAAGTTGCGCCCAGCTTGCTGAAGGATTACTGTGTGCCTCATTTGTTTCAAGAAGACTACTTTGATATTTTAGATCAAGATAAACGACCACCCTACAGGTGGCTCATTATTGGGCCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACTAGTGCATGGAATACTCTACTTTCTGGCCGCAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGAGTCACAGTGCATGTCAATGAAGATGATGGTGATGTTAACATTGAGACACCATCATCACTGCAGTGGTGGCTGGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAATTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTAAACTTGGAAACAACCATCGCTGTAACGCAGAATTTTGTGAATTCCAATAACTTTGAATTTGTGTGTTTGGATATGGCCCCTGGTTATCGTCACAAAGGAGTTTGCCGTGCCGGATTGCTGGCTCTTGATGATGATGGTTATGAAGATGTCAGAAAGAATATGTTCTGTGACGAACAGAATCCAAGTTGTTCCACTCTGTCAAGAAGGGAGAAAAGAGCCAGAAATGATGAAGATGGAGATGATTTGAATAATGAAAGAACAAAAAATGGTGCAACTGGAAGCTATAATGCATGGAAACAAGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGGATAAAGATAGGGACCACTACAGGTCCCCTTGGAGCTCAGGCAACAGCATTGGCCAGCGAGAACTAAGAGAATGGTTATCCAAACTTTGGATTGTAAAACCTGAAATGAGAGAGCTAATATGGAAGGGGGCATGTATTGCACTAAATGCTGACAAGTGGTCAGAATGCCTGGCTGATATTTGTTCCATGCACAATATGCCCTCTCCCCTTGATGATGAAAGACTTCCTGTTGGTACGGGTAGCAATCCTGTTTTTCTTGTTGGAAACACAGTTGTCAAAATCTTTGTTGAAGGAGGGCTAGAAGCTGCACTTTACAGTTTAGGCACAGAGCTCGAGTTTTACAATATATTGCATGAAGTCAACTCCCCTCTCAGGAATCATATTCCTGAAGTTCTGGGCAGTGGGATTCTTTATCTTGACAATGGAACTTATACCAATCTTCCTTGGGATGGAAAGGGAGTCCCTGATATTGTTATCAAGAATAATCTACCCAGGCAAAAATGTGGAGTTAATGATTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATGCTGAGATGCCAATACACGAATCAGTTAGTTCAGCTGGCCCCTCAAATATATGGCCTTATATTATAACAAAACGTTGCAAGGGTAAAATATTTGCAGAGTTAAGAGATAGACTATCAAGGGAAGATGTAACAAACTTAGCTTCCTTCTTGGGAGAGCAGTTGCGCCACATTCACCTTTTACCACGTCCACCATTGGATATTTCACCTTTCTCTGTTATTGAACCGGATTCAGGCTTGCCCAAGATCAATTGTCATGTTTCAAGTTTTAATTATAAATCGAACATGGTAGCAGAGTGGGAAATCTTCATTGGAACTTTAACAAGAAAGAGGAAGGATGTCTTGAGCCGTTTGACTAAGTGGGGAGACCCGATTCCTAGGAAATTGATAGAGAAGGTCGATGAATATATCCCTCATCAATTTGCAAACATATTGAATATAACTGAGGGCAATGCTTGTAAACCATGCTCCTGGGTACACTCTGACATTATGGATGATAACATTTACATGGAACCATCTTGTGATTCTACCTCATGTGAAACTTCTGATGAGGGAACGCTGGCAGACAATGGTTTTTCATGTGGTTCCAGTGAAAATAGAGATGTGAAATCATGGCGCCCTAGCTACATCCTTGATTTCAGTGATCTTTCAATAGGTGATCCTATATTTGATTTGATACCAATTTATTTAGATGTATTTAGAGGTGATTCTCATCTCCTCAAGCTATTTTTGGAAAGCTACAAGCTTCCTTTTGCGATTAATAATTCAAAGAATGAGTCAACGGAGAATGATGATAAGTTTGGCCGGCTTTCATATCTTGCTATGTGCTACTGTATATTGCATGACGATGATGTCTTGGGAGCTATTTTTAGTATATGGGATGAACTTAGATCAGCAGATTCATGGGAAGAAGTTGAGTTAACAGTGTGGGGGGAGTTGAACAATTACAAAGGCTTTCCTTGA 2931 0.4091 MEPSTVQTAGGPRDRRADALGDFRVLPDEILCSILEELTPRDVARLACVSSVMDILCNEEPLWMRLCLKGASGLLQYKSSWKKTALHRENLPEKYIECNRGFLHFDGFNSLYLYRRLYRSHTKLDTFYVDNGNVERRKDVSLEDFRDEYDGKKPVMLTGLADAWPARHKWAIDHLLLNYGDVAFKISQRSSRKILMNFKDYVSYMKLQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDYFDILDQDKRPPYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRAGLLALDDDGYEDVRKNMFCDEQNPSCSTLSRREKRARNDEDGDDLNNERTKNGATGSYNAWKQGFSYDINFLSMFLDKDRDHYRSPWSSGNSIGQRELREWLSKLWIVKPEMRELIWKGACIALNADKWSECLADICSMHNMPSPLDDERLPVGTGSNPVFLVGNTVVKIFVEGGLEAALYSLGTELEFYNILHEVNSPLRNHIPEVLGSGILYLDNGTYTNLPWDGKGVPDIVIKNNLPRQKCGVNDFSFGVWGKKQFEYRNAEMPIHESVSSAGPSNIWPYIITKRCKGKIFAELRDRLSREDVTNLASFLGEQLRHIHLLPRPPLDISPFSVIEPDSGLPKINCHVSSFNYKSNMVAEWEIFIGTLTRKRKDVLSRLTKWGDPIPRKLIEKVDEYIPHQFANILNITEGNACKPCSWVHSDIMDDNIYMEPSCDSTSCETSDEGTLADNGFSCGSSENRDVKSWRPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSHLLKLFLESYKLPFAINNSKNESTENDDKFGRLSYLAMCYCILHDDDVLGAIFSIWDELRSADSWEEVELTVWGELNNYKGFP 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0408 976 SUPERFAMILY Clavaminate synthase-like 132 378 - -
Lele04g0408 976 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Lele04g0408 976 SUPERFAMILY F-box domain 16 83 IPR036047 GO:0005515
Lele04g0408 976 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 20 591 - -
Lele04g0408 976 MobiDBLite consensus disorder prediction 417 447 - -
Lele04g0408 976 Pfam F-box-like 25 69 IPR001810 GO:0005515
Lele04g0408 976 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Lele04g0408 976 SUPERFAMILY Protein kinase-like (PK-like) 675 903 IPR011009 -
Lele04g0408 976 SMART cupin_9 214 381 IPR003347 -
Lele04g0408 976 FunFam F-box protein At1g78280 114 371 - -
Lele04g0408 976 Gene3D - 17 96 - -
Lele04g0408 976 Pfam Cupin-like domain 150 373 IPR041667 -
Lele04g0408 976 Gene3D Cupin 113 371 - -
Lele04g0408 976 MobiDBLite consensus disorder prediction 421 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0408 Lele-ChrLele04 2432844 2439689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0408 8 972 Glycosyltransferase AT1G78280 61.515 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele04g0408 Cupin_8 3.7e-21 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0408 04 2432844 2439689 Lele04g0408 04 2432844 2439689 ECH
Lele01g0402 01 2365339 2372524 Lele04g0408 04 2432844 2439689 hybridization
Lele02g0401 02 2342878 2349645 Lele04g0408 04 2432844 2439689 hybridization