Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0407 ATGTCGACTCTGGCAACGGTACCACCACCTCCTTCTGCATCCCTCTTTTCCGTAGATCCTGTCAGAAGTTGGAAATCTAAGAAGGCTCTACAGCAGCCTGAATACCCAGATAAAGAGGAGCTGGAATCGGTGCTTCTGACTATCGAAGCGTTCCCTCCTATCGTGTTCGCCGGAGAGGCCAGGAGCCTGGAGGAACGTCTGGCCGAAGCTTCCATGGGGAATGCTTTTCTTCTGATGGGCGGAGATTGTGCCGAGAGCTTCAAGGAATTCAATGCCGTCAACATTCGTGACACCTTCAGAATTCTTCTTCAGATGAGCGTTGTTATGACTTTCGGAGGCCAAATGCCCGTCATTAAGGTGGGAAGGATGGCGGGACAGTTTGCAAAACCCAGATCGGATCCGTTCGAGGAGAAAAACGGCGTGAAGCTTCCGAGTTACCGAGGAGATAATATCAACGGAGATGCTTTTGATGAGAAGTCAAGAATTCCGGATCCACAAAGGATGATAAGAGCGTACTGTCAATCGGCAGCCACCCTTAACCTTCTTAGAGCTTTTGCCACCGGAGGGTATGCTGCTATGCAAAGGGTCACACAATGGAATTTGGACTTCACGGAACATAACGAGCAGGGAGACAGGTTGGATTCCACTTCTGGACTCTACTATGACTGCTCCGCCCATATGCTTTGGGTCGGGGAACGGACCAGGCAGTTGGATTGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCTCTGGGGGTTAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAAACTCATTGAGATTTTGAACCCCCAAAACAAACCAGGAAGAATAACTGTGATCACAAGGATGGGAGCTGAAAATATGAGAGTGAAGCTTCCGCATCTAATCAGGGCAGTTCGAAGAGCTGGGCAAATTGTCACATGGATCACCGATCCTATGCATGGAAACACCATCAAGGCTCCTTGCGGTCTTAAAACCCGCCCCTTTGATTCCATCAGGGCGGAGGTGAGAGCATTCTTTGATGTGCACGAACAAGAAGGTAGCAACCCCGGAGGAGTTCATCTAGAGATGACTGGTCAGAATGTGACGGAGTGCATCGGTGGATCAAAGACGGTCACCTTCGACGACCTCAACTCTCGTTATCACACACACTGTGACCCTAGGCTCAATGCTTCTCAGTCTCTTGAGCTGGCCTTCATCATCGCCGAACGGCTTAGCAAGAGCAGGATGAGATCGCAGAAGTTCCTGGGTTCCCAGTGGTAG 1275 0.498 MSTLATVPPPPSASLFSVDPVRSWKSKKALQQPEYPDKEELESVLLTIEAFPPIVFAGEARSLEERLAEASMGNAFLLMGGDCAESFKEFNAVNIRDTFRILLQMSVVMTFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNINGDAFDEKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHNEQGDRLDSTSGLYYDCSAHMLWVGERTRQLDCAHVEFLRGVANPLGVKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWITDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSNPGGVHLEMTGQNVTECIGGSKTVTFDDLNSRYHTHCDPRLNASQSLELAFIIAERLSKSRMRSQKFLGSQW 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0407 424 Pfam Class-II DAHP synthetase family 212 406 IPR002480 GO:0003849|GO:0009073
Lele04g0407 424 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 212 418 IPR002480 GO:0003849|GO:0009073
Lele04g0407 424 SUPERFAMILY Aldolase 18 409 - -
Lele04g0407 424 Gene3D Aldolase class I 52 411 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0407 Lele-ChrLele04 2425713 2430601 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0407 04 2425713 2430601 Lele25g0373 25 2273032 2273647 CCT
Lele04g0407 04 2425713 2430601 Lele27g1712 27 22447859 22453014 CCT
Lele04g0407 04 2425713 2430601 Lele04g0407 04 2425713 2430601 ECH
Lele01g0401 01 2359184 2363065 Lele04g0407 04 2425713 2430601 hybridization
Lele02g0399 02 2337143 2340631 Lele04g0407 04 2425713 2430601 hybridization