Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0403 ATGCATTGCTCTAATAAAATCAAAGAGGATAATATAGCAAGCAGATATATGGAGCCCTCATCGGATACAATATGTAGTTCTTATTACCTCCCTTGTTCACGTGATGATCCTACCACTGATTCCCATCTTTTGCCTACCATGAACCGGCCGAGTCATCATCTTCAGCTTCAGCCTCTACCTCTACTGAGCAGCTTCCTTGGTTCAACTCCATTTACCTCAAAACCTTGCCCTACGACGACTCATGATGATGTTGGTGACGAGGATGTCACAGTAGCCTTACACATAGGACTCCCCCATAATTCCAGCACTGCTTCTTCAGGTCCAAATGGAGTCATCAATGAAGCCCAAGTGCCCAGGAATTACTGGATACCAACCCAAGAACAAATCCTCGTCGGATTCAGTCATTTCTCTTGCCCCGTCTGCCTCAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAGTACCGAAGAGGACCAGAATCGCTGAAAAGAACACATCCAAGGCCGTTGTTGGACATTCCGTGTTATTGTTGCGCAAGAGGATGCAAGAACAACATAGAGCACCCGAGGGCAAAGCCACTGAAGGATTTTAGGACGCTGCAGACACATTACAAGAGGAAGCACGGGAGCAAGCCGTTTATGTGTCGCAAGTGTGGCAAGACAATGGCGGTGAAGGGAGACTGGCGAACTCATGAGAAAAATTGTGGTAAGCGATGGCTTTGCGTCTGTGGCTCTGACTTTAAACACAAGAGGTCTCTTAAGGACCATATCAAAGCCTTTGGCTCTGCTCATTACCCTCTCTCTCCTTCCTCCGATGCCATCTGA 846 0.4728 MHCSNKIKEDNIASRYMEPSSDTICSSYYLPCSRDDPTTDSHLLPTMNRPSHHLQLQPLPLLSSFLGSTPFTSKPCPTTTHDDVGDEDVTVALHIGLPHNSSTASSGPNGVINEAQVPRNYWIPTQEQILVGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTMAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSPSSDAI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0403 281 Gene3D Classic Zinc Finger 198 271 - -
Lele04g0403 281 FunFam zinc finger protein WIP2-like 135 158 - -
Lele04g0403 281 Gene3D Classic Zinc Finger 135 158 - -
Lele04g0403 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Lele04g0403 281 PANTHER ZINC FINGER PROTEIN WIP2 18 274 IPR043584 GO:0003700|GO:0010468
Lele04g0403 281 SUPERFAMILY beta-beta-alpha zinc fingers 131 158 IPR036236 -
Lele04g0403 281 FunFam Zinc finger protein WIP2 189 271 - -
Lele04g0403 281 SUPERFAMILY beta-beta-alpha zinc fingers 202 240 IPR036236 -
Lele04g0403 281 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0403 Lele-ChrLele04 2404821 2405821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0403 43 273 C2H2 Transcription Factor Family AT1G34790 57.422 2.21e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0403 None None None