Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0402 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACCACTTTCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTGTAATCACCGATAAGAATACAGGAAAATCTAAAGGCTACGGATTCGTCACATTCCGTGATCCAGAATCAGCCAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGACGGAAGAAGAGCCAACTGTAATATTGCTTCTCTGGGACGACCTCGACCTACCCCACCCCGAGGGAGGAATACATTTCAAGGTGGGAGCACGTCACAGAGTGCAGCATCATATGGTGGAGCTCCGGCAGCAGTACCGCCGGCGCTTCCTCCGCCGCACCCTCCTGCGGCGGCGGGGGCAGGGCTGATGTACCCGGCATATGGCTACTCTCCCTACTCTCCTGATTACGGGTACCACCAAGCGGCAATGTGCAACCCCCAGATTCAGCAGCCACAATACTACCAGCAAGTGTATGGAGCTTCATCGTCGGGCGTGAGCCCCCCATATTACTATGGCGGGTATCCTGTGCAGCCACCCAGGGCCTCTTATTCTACGCCCAACCCTCATCGCCTGCCACCTGGGCCCCCATATCTGTACTACCCTTACCCTCCTTCGCCCTCAGCCGCACCCCCGCCCTTGGATCTCTCCTTCTCCGCTTATCGTCCCCCTCGACAACCAACACTGTTAAGGCAGCCCCTCGTCCCTTCCTCTCCTGATTCGCAGTCACAGGGTCAGCAGCGTACCTCCTCCGAGACCGCGGCTGCTGCTTCATCGGAAAGTCCGAGTACTCGAGGAAAAAACTAA 867 0.5582 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVVITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPTPPRGRNTFQGGSTSQSAASYGGAPAAVPPALPPPHPPAAAGAGLMYPAYGYSPYSPDYGYHQAAMCNPQIQQPQYYQQVYGASSSGVSPPYYYGGYPVQPPRASYSTPNPHRLPPGPPYLYYPYPPSPSAAPPPLDLSFSAYRPPRQPTLLRQPLVPSSPDSQSQGQQRTSSETAAAASSESPSTRGKN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0402 288 MobiDBLite consensus disorder prediction 251 288 - -
Lele04g0402 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lele04g0402 288 Gene3D - 3 111 IPR012677 -
Lele04g0402 288 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele04g0402 288 MobiDBLite consensus disorder prediction 234 288 - -
Lele04g0402 288 MobiDBLite consensus disorder prediction 92 131 - -
Lele04g0402 288 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Lele04g0402 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lele04g0402 288 PANTHER BOULE-RELATED 6 270 IPR037366 -
Lele04g0402 288 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele04g0402 288 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Lele04g0402 288 MobiDBLite consensus disorder prediction 104 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0402 Lele-ChrLele04 2400238 2403376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0402 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 2.81e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0342 25 2089314 2094486 Lele04g0402 04 2400238 2403376 CCT
Lele04g0402 04 2400238 2403376 Lele04g0402 04 2400238 2403376 ECH
Lele01g0397 01 2332014 2334879 Lele04g0402 04 2400238 2403376 hybridization
Lele02g0394 02 2310522 2313509 Lele04g0402 04 2400238 2403376 hybridization