Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0382 ATGAAGAACCAGAATCTGGTGGTTCCTGATGTAAAATCACGTCTTAACACCTTTATTGAGGTGGCCGTGTCCATTTCCCACTCTCCCATGATGCCCAGCACGGCGGTGCCAGAATCGCTGGTCGTGCTTGGTGGGATCTTCGGGAAGAAGATAATGAAGAGGCTTGACGATGGAGGAGGAAAAGGTGGAGCCAGAGTCAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCCACACGACTCAAATCCTCCCTCTCTGCTTCTCAAAACCAGCACCTTCATCATCCTTCGGCGATCAACATGTTTGATCAGATAATCAGTAACTCAAAAGATAAGCAAATAGTAATCTTCCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCTGATAAAGCATTCATGACTAACAAGATGAGAGCAACAGTGAAGGATATAGCAAAACACTTTCCCACGGCCATCGTGAGTGGAAGGCGGAGAGACAAGGTTTACAATTTTGTGAGATTAGCAGAGCTGTACTATGCGGGCAGCCATGGCATGGACATCAAAGGGCCGACAAAGAGCCAAGGATCTAAGAAAGGTAACCAAGCGGCCCCCTTCCAACCTGCAAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCTTGTTGGAGAAAACAAAATCCGTGGAAGGGGCTAAGGTTGAGAATAACAAGTTTTGTTTGTCCGTACACTTCCGTTGCGTTGACGAGAAGAGCTGGGGTGCACTGGCGGAGCAAGTTCGGCTAGTGCTGAATCAGTACCCAAAACTTAAGCTGACGGAAGGCAGAAAAGTGCTTGAGATCCGACCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACATTCGCTCGGATTCGCCAATTCCAAGGATGTCTTCCCCATCTATATCGGCGATGACCGAACTGACGAGGATGCTTTTAAGGTGTTACGTAGGAGAGGCCAAGGCATCGGAATTCTTGTATCCCAAGTTCCCAAAGAAACGGAAGCTTCCTACACTTTACAAGACCCATCAGAGGTTGGGCAATTTTTGCGGCGTTTGGTAGAGTGGAAAAGGAGGAGTAATAATGAGAGTTGA 1113 0.4717 MKNQNLVVPDVKSRLNTFIEVAVSISHSPMMPSTAVPESLVVLGGIFGKKIMKRLDDGGGKGGARVNAWIDSMRASSPTRLKSSLSASQNQHLHHPSAINMFDQIISNSKDKQIVIFLDYDGTLSPIVADPDKAFMTNKMRATVKDIAKHFPTAIVSGRRRDKVYNFVRLAELYYAGSHGMDIKGPTKSQGSKKGNQAAPFQPASQFLPMINEVYKILLEKTKSVEGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVLNQYPKLKLTEGRKVLEIRPTIKWDKGKALEFLLHSLGFANSKDVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSQVPKETEASYTLQDPSEVGQFLRRLVEWKRRSNNES 370
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0382 370 FunFam Trehalose 6-phosphate phosphatase 114 200 - -
Lele04g0382 370 Gene3D - 114 199 IPR023214 -
Lele04g0382 370 Gene3D - 204 370 IPR023214 -
Lele04g0382 370 Pfam Trehalose-phosphatase 117 350 IPR003337 GO:0003824|GO:0005992
Lele04g0382 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 59 368 IPR044651 GO:0004805|GO:0005992
Lele04g0382 370 TIGRFAM T6PP: trehalose-phosphatase 112 360 IPR003337 GO:0003824|GO:0005992
Lele04g0382 370 SUPERFAMILY HAD-like 115 363 IPR036412 -
Lele04g0382 370 FunFam Trehalose 6-phosphate phosphatase 204 280 - -
Lele04g0382 370 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 116 325 IPR006379 -
Lele04g0382 370 FunFam Trehalose 6-phosphate phosphatase 210 369 - -
Lele04g0382 370 CDD HAD_TPP 115 353 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele04g0382 Lele-ChrLele04 2274563 2276549 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0382 105 367 Trehalose Biosynthesis Gene Families AT1G06410 28.369 3.06e-11 63.2
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0382 04 2274563 2276549 Lele25g0346 25 2118382 2119446 CCT
Lele04g0382 04 2274563 2276549 Lele26g0363 26 2192880 2193561 CCT
Lele04g0382 04 2274563 2276549 Lele27g1735 27 22626956 22627645 CCT
Lele04g0382 04 2274563 2276549 Lele28g0362 28 2215252 2216477 CCT
Lele04g0382 04 2274563 2276549 Lele04g0382 04 2274563 2276549 ECH
Lele01g0377 01 2202457 2204739 Lele04g0382 04 2274563 2276549 hybridization
Lele02g0374 02 2176993 2178982 Lele04g0382 04 2274563 2276549 hybridization