LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0382	ATGAAGAACCAGAATCTGGTGGTTCCTGATGTAAAATCACGTCTTAACACCTTTATTGAGGTGGCCGTGTCCATTTCCCACTCTCCCATGATGCCCAGCACGGCGGTGCCAGAATCGCTGGTCGTGCTTGGTGGGATCTTCGGGAAGAAGATAATGAAGAGGCTTGACGATGGAGGAGGAAAAGGTGGAGCCAGAGTCAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCCACACGACTCAAATCCTCCCTCTCTGCTTCTCAAAACCAGCACCTTCATCATCCTTCGGCGATCAACATGTTTGATCAGATAATCAGTAACTCAAAAGATAAGCAAATAGTAATCTTCCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCTGATAAAGCATTCATGACTAACAAGATGAGAGCAACAGTGAAGGATATAGCAAAACACTTTCCCACGGCCATCGTGAGTGGAAGGCGGAGAGACAAGGTTTACAATTTTGTGAGATTAGCAGAGCTGTACTATGCGGGCAGCCATGGCATGGACATCAAAGGGCCGACAAAGAGCCAAGGATCTAAGAAAGGTAACCAAGCGGCCCCCTTCCAACCTGCAAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCTTGTTGGAGAAAACAAAATCCGTGGAAGGGGCTAAGGTTGAGAATAACAAGTTTTGTTTGTCCGTACACTTCCGTTGCGTTGACGAGAAGAGCTGGGGTGCACTGGCGGAGCAAGTTCGGCTAGTGCTGAATCAGTACCCAAAACTTAAGCTGACGGAAGGCAGAAAAGTGCTTGAGATCCGACCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACATTCGCTCGGATTCGCCAATTCCAAGGATGTCTTCCCCATCTATATCGGCGATGACCGAACTGACGAGGATGCTTTTAAGGTGTTACGTAGGAGAGGCCAAGGCATCGGAATTCTTGTATCCCAAGTTCCCAAAGAAACGGAAGCTTCCTACACTTTACAAGACCCATCAGAGGTTGGGCAATTTTTGCGGCGTTTGGTAGAGTGGAAAAGGAGGAGTAATAATGAGAGTTGA	1113	0.4717	MKNQNLVVPDVKSRLNTFIEVAVSISHSPMMPSTAVPESLVVLGGIFGKKIMKRLDDGGGKGGARVNAWIDSMRASSPTRLKSSLSASQNQHLHHPSAINMFDQIISNSKDKQIVIFLDYDGTLSPIVADPDKAFMTNKMRATVKDIAKHFPTAIVSGRRRDKVYNFVRLAELYYAGSHGMDIKGPTKSQGSKKGNQAAPFQPASQFLPMINEVYKILLEKTKSVEGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVLNQYPKLKLTEGRKVLEIRPTIKWDKGKALEFLLHSLGFANSKDVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSQVPKETEASYTLQDPSEVGQFLRRLVEWKRRSNNES	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0382	370	FunFam	Trehalose 6-phosphate phosphatase	114	200	-	-
	Lele04g0382	370	Gene3D	-	114	199	IPR023214	-
	Lele04g0382	370	Gene3D	-	204	370	IPR023214	-
	Lele04g0382	370	Pfam	Trehalose-phosphatase	117	350	IPR003337	GO:0003824\|GO:0005992
	Lele04g0382	370	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	59	368	IPR044651	GO:0004805\|GO:0005992
	Lele04g0382	370	TIGRFAM	T6PP: trehalose-phosphatase	112	360	IPR003337	GO:0003824\|GO:0005992
	Lele04g0382	370	SUPERFAMILY	HAD-like	115	363	IPR036412	-
	Lele04g0382	370	FunFam	Trehalose 6-phosphate phosphatase	204	280	-	-
	Lele04g0382	370	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	116	325	IPR006379	-
	Lele04g0382	370	FunFam	Trehalose 6-phosphate phosphatase	210	369	-	-
	Lele04g0382	370	CDD	HAD_TPP	115	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0382	Lele-ChrLele04	2274563	2276549	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0382	105	367	Trehalose Biosynthesis Gene Families	AT1G06410	28.369	3.06e-11	63.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele04g0382	04	2274563	2276549	Lele25g0346	25	2118382	2119446	CCT
	Lele04g0382	04	2274563	2276549	Lele26g0363	26	2192880	2193561	CCT
	Lele04g0382	04	2274563	2276549	Lele27g1735	27	22626956	22627645	CCT
	Lele04g0382	04	2274563	2276549	Lele28g0362	28	2215252	2216477	CCT
	Lele04g0382	04	2274563	2276549	Lele04g0382	04	2274563	2276549	ECH
	Lele01g0377	01	2202457	2204739	Lele04g0382	04	2274563	2276549	hybridization
	Lele02g0374	02	2176993	2178982	Lele04g0382	04	2274563	2276549	hybridization