LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0380	ATGGACTCGTACAGTGATCTGCAAATTCTGCCGGATCCCTTCAACGGTGAGTTAATGGAAGCACTCGAGCCTTTTATTAAGAGTGCCTCCGCAACATCCTTACCGTCTCCGTACTGGCTCTCATCCCCTGTTTCGAATCTATTCCTGCCTTCTCAACCTCCTTCTTCCAACTTCTTCCATTCCTCTCCTTCAGTCCCTCTTCAGCCCAATTTGTCTGCAGATGGTTGCTCGCCATCGATGACCCATGTATTTACCGACGGGTTATTCAACAGCCAAAACTTGATTGGTTTCGGGCAGCCAACTCCTCTTGGGTTCAACAACCAGACTGTGTCTCAGACTACCCAGATTCCACCTCAGATCCTTCCCCAGAATCCCCAAAACATCATGACCTGGCAGCAAAATACCCTCAGCTTCTTGAGCCCCAAGCCTATTCCCATGAAGCAAATGGGTGTGCCTTCTAAGCCCACCAAGCTGTACAGAGGGGTCAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCGAAGAACCGGACCCGCCTCTGGCTCGGCACCTTCGATACTGCAGAAGAAGCTGCCCTCGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTCCGCCAGGCTTAACTTCCCCAACCTCCGACACCGAGGTTCCTGTGTTGAGGGCGAATTCGGGGAGTTCAAGCCTCTACATTCCTCCGTGGATGCAAAGCTTGAAGCAATTTGCGAAAGCATGGCTGATATGCAGAAACAGGGAAAGTCGGAGAGACCAAAGAGGTCTTCAGGGAGGTCCAAATCGGGTCCCAAGGCCGCTCAGCCGCAGACTGTAACGCTCTCGGATGAGCAGCCGGTCCCTGGCGAAGCTGATTTGAGGGGAGCGGAGAACTCTGACCACAAGGTGGAGACTTCCTCGTCTCCGGTGATGACTGAGAGTGGGGAGTCTGGTGGTTCATCTCCTCTGTTGGATTTGACATTCGACGATGCCAATGAGCCTCAATGGGAAAGTATGGCGGAGATTTTTAATCTGCAGAAGTACCCTTCTGAGATCGACTGGGCATCATTGTGA	1077	0.5292	MDSYSDLQILPDPFNGELMEALEPFIKSASATSLPSPYWLSSPVSNLFLPSQPPSSNFFHSSPSVPLQPNLSADGCSPSMTHVFTDGLFNSQNLIGFGQPTPLGFNNQTVSQTTQIPPQILPQNPQNIMTWQQNTLSFLSPKPIPMKQMGVPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDSARLNFPNLRHRGSCVEGEFGEFKPLHSSVDAKLEAICESMADMQKQGKSERPKRSSGRSKSGPKAAQPQTVTLSDEQPVPGEADLRGAENSDHKVETSSSPVMTESGESGGSSPLLDLTFDDANEPQWESMAEIFNLQKYPSEIDWASL	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0380	358	Pfam	AP2 domain	159	207	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	CDD	AP2	157	217	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	Gene3D	AP2/ERF domain	158	216	IPR036955	GO:0003700\|GO:0006355
	Lele04g0380	358	SUPERFAMILY	DNA-binding domain	158	216	IPR016177	GO:0003677
	Lele04g0380	358	PRINTS	Ethylene responsive element binding protein signature	181	197	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	PRINTS	Ethylene responsive element binding protein signature	159	170	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	MobiDBLite	consensus disorder prediction	303	322	-	-
	Lele04g0380	358	MobiDBLite	consensus disorder prediction	251	333	-	-
	Lele04g0380	358	ProSiteProfiles	AP2/ERF domain profile.	158	215	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	SMART	rav1_2	158	221	IPR001471	GO:0003700\|GO:0006355
	Lele04g0380	358	Coils	Coil	356	358	-	-
	Lele04g0380	358	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	16	358	-	-
	Lele04g0380	358	MobiDBLite	consensus disorder prediction	269	285	-	-
	Lele04g0380	358	FunFam	Ethylene-responsive transcription factor 2	157	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0380	Lele-ChrLele04	2263366	2264442	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0380	16	358	AP2-EREBP Transcription Factor Family	AT1G78080	49.721	1.86e-86	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele04g0380		AP2	8.2e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g0347	26	2090172	2090805	Lele04g0380	04	2263366	2264442	CCT
	Lele27g1755	27	22736017	22739754	Lele04g0380	04	2263366	2264442	CCT
	Lele28g0346	28	2105859	2108724	Lele04g0380	04	2263366	2264442	CCT
	Lele04g0380	04	2263366	2264442	Lele04g0380	04	2263366	2264442	ECH
	Lele01g0376	01	2193214	2194296	Lele04g0380	04	2263366	2264442	hybridization
	Lele02g0373	02	2165962	2168222	Lele04g0380	04	2263366	2264442	hybridization