Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0350 ATGCCCGGGGGCCGATGTCACCGGAGGAGGAAGATGAAGGGCAGAGGTGCGGAAGGAGGTTGCGGAACCGAGGACATGCCTTGCCCGGTTTCGAGGGTTCCAGTTGAATCCCTGGGGACCCAGCCGAGAAATTCTGATAACTCTACTGCCCTTGAAATTGATTACTACTCGCAGGCTATAAAAGCGCTCAGTGAGCGCTCTCCTTTTGATGTTGCGGAAGAGACTTCAACGTCGACGGTGCCTACACTGCCCAGTGGGTGGGCAAGCTTCTTAAACCGCCATTCCGAGAGTCGTAGGTTCCACAAGAAGTCCCATTCGGGCGCGGACAAGAAATCGTCTAGAGCATGTGAGAAGTTGCGTAGCTCAAGTATATGGATTGAGACTGAGGATTACTTTAGACACTTGAAATTGCCGGACATAGACACCTTGTTGGAGGCATCCTCCTCTTTTTGTTTAGCTGCTCGGAAGTGTTTTTATGTTCCGCCAGTTGGAAATGCTCCAAGATCAAATGTAGCTAGTTACGAGGATGACAAGGAAACTGATGGAAACCTAAATAGCGAGGATGTGAAGAATGAGAACCGTGTCATGGAAAGTAACGGCGTTGCTGATGGAGTTTTTGCCCAGGATGACAAGGGTCGTGATGCTTTTGATTCGTCTAGTAGTTTAGAATGGCTTTTAGGATGTAGGAATAAGATTTCTCTGATTCCTGAGCGCCCTTCAAAGAGGAGGAAGCTTTTAGGCGGTGAATCTGGGTTGGATACATTTTTAATGACCAGTCCTTGTTATGGAGACTCTCCTCTGTGTCATTATTGCTGCAGGGGAGACACCGGTAGCGAGTCCAATCAATTAATTGTTTGCGTTATTTGTAAAGTTGCAGTTCATAAGAAGTGCTATGGTGTGCAAGATGATGTAGACGAGTCTTGGTTGTGCTCTTGGTGCCAGCAAAAGGGTGACATTTATGAAATGGTGCATCCTTGTGTGCTTTGTCCAAAGAAGGGTGGTGCTTTAAAGCCTGTTCATAGACATGCGGAAAGTGTTGGATCTGCGCAATTTGCTCACTTGTTTTGTTGTTTGTGGATTCCTGAGGTTTATATAGAGGATTTGAAGAAGATGGAGCCTGTTGTGAATGTAGGAGGAGTCCAGGAAACCCGGAAAAAATTAGTCTGTAATATTTGCAAGGTGAAGTTTGGCGCATGCATTCGATGTAGCCATGGATCCTGCAGGTCTTCTTTCCACCCGTTATGTGCCAGGGAAGCTAGCCACAGGATGGAGGTTTGGGCAAAAAAAGGTCTTGACAATATTGAGTTGCGGGCCTTTTGTTCCAAGCACTCTGTTATACAAGAGAACAGCACCATCTTGCCTTCAGGTGGTTCTGTAGCTTTTGGTAGTGGTTTATCTTCTGCTGACAGCCTTCGAGCAGGCACACACTACAGTTTGAAAATTGGTTGCCAAAATGGAGACAATATTGGGATAGTTTCTGATGGTAGTCCTGATAAATTGAGTCATAGTGAACCACCGGATGAAATGTCTGATTGTCAGTTCAATGCTCATGAAACATCAGAATGTAGTGGTTTGCCGCAACAAAATACTGCAGTGGGGGGAAGGACTGATGAAATTGCCAATGCATCTGACTCCCTTGGTTTTGCGCTTCTTTTGAAAAAGTTGATAGATAGAGGAAAAGTTGATCTTAAAGATGTAGCTTTGGAGATTGGCATTTCTTCTGATACATTAAGCGCAAATATTAATGATTCTTGCATGGCCCCTGATGTGCAACTCAAAATAGTCAATTGGCTAAAATCTCATGTATATACTAATGCATTTCAAAAAAGTTTGAAAGTCAAATTCAAGCCTGCCAACTCATCCAAGGAGGAAAATGGAATCACTGATGGTTCTGATACTATACAGATATCAGATTCTGAGTTGCCAGATCCTGTTGCTGTTAAGTCAGTGCCATCAAGGAGAAGAACAACCAGTAATATCAGGATTCTGAAAGATAACAAAATGATTTGTTCATCTGGGGAGTTGTCTAGTGAGAACCGAATACAAATGGACAAGGTCAAAGGAGGTCAATCTGAACTTGAAAATTCTGAAACATCAAACGAAGCATCCATTCTTGATGCAACTGAAATGAAATTAACCAAGTCTGAGGATGCTTTTTTTGATTCCCAAGGGAATGCAGATAAACCTGGCAAAATAATCTTATCTGGTGGTGTTTCGGAAGAAAAGCTTGCTGATCGCCACCATTCTTCTTGTTCTGCTGCAGATTTACCTGCTTCTGGTTTCATGGAGATTGAAGGAAACTCTTGTTACAGTAACCCATACATCCATAAAAAGTTATCGCACATTCATGATGGGGTGCTTTCGGAGGATGTTATATGTGAAAGGGAGGAAGAAAATTTTTATTTAGATGGATTATCAGTGGCTAGTGGTGGCTCTAGTTACCAAAATCCTGAAGTAACATGCAGTGACATATGTAAGGCGGATAAAGTAAATACGAAGCAATTGGTTATGGCTAGAAATATGGGTTTATTAGAATCTTGTCCAAAAGATGAAGTGGAGGGTGAACTAATATATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAGGAAGAAGTTTGCTGATAATTTAATCTCTAGTATAGCTAAGAGTCTTCCGCAGGAGATTGATTCTACACACCAGGAAAGATGGGATGCTGTACTTGTTAACCAGTATCTCCGTGATCTTAGGGAAGCAAAAAAGCAGGGCAGAAAAGAGAGAAGGCACAAGGAAGCGCAGGCAGTGTTGGCGGCTGCAACTGCAGCAGCAGCAGCCTCATCTAGGGTTTCTTCATTGCGGAAGGATGCCTTTGAAGAATCTGTACTGCCGGAGAATTTGTTAAAGCACACTTTCAGTGGAAGGACTGGTGTTTGCTCTCAGCCAATGCCGCGGGCCAAAGGAACACTTTCAAGAGTAGCTATGGTTAGGACTTCATCAGAAAAACATTCAGATTGTGGTCTGCCAGATGCAGATTTTTCTAAGGAGCATCCCAAATTATGTGATATTTGTAGACGATCTGAAACTATATTGAACCCAATTCTTATCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGGACTGCTATCGTAGTGTGAAGGAATTCACAGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATTTAGAATATCTGGGCAACCTTCTATAAATTCCTGGGAGAAACCTTGTGTTGTTGCGGAATGTGGGATATGTGGTGGTACTACTGGCGCTTACAGGAAGTCTTCTGATGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCGACTTTCAGAAGAGGACAAGTAAATGCTGTTGAAGGAATGGAAACTGTGTTGAAAGGAGTGGACACGTGTTGCATTTGCCACCGCAAGCATGGTGTATGCTTAAAGTGTAGCTATGGCCATTGTCAGACCACATTTCATCCATCCTGTGCTAGAAGTGCTGGTTTTTACATGAATGTGAGGGCTGCAAGTGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAGCATGGTTCAGAGCAGAGGACTAAGGCTGAAAGCCAAAAACATGGAATTGAAGAATTAAAAAGTATCAAACAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAGATAAAGCGGGAATTGGTTCTATGTTCACACGACATACTTGCATTCAAAAGAGATCATGTTGCTAAGTCTGTCTTGGTGCATAGCCCTTTCGTCCTTCCTGATTGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAAGCTGTTCAAAGGTCGGATGATGTAACGGTGGACAGCTCAGTTTCTGCTAAGCATCGAGTCCAAGTCGATGTGACCATGGACAGTGACCCAAAGTTGGATGATGACTGTTCAACTTCACAAAGCCATTATAATCATAAGATTCCTGAGAGGGTGCAGTTTTCTGGCAAGCAGATTCCTCAGAGAGCTTCCATCGTAACGCGAAATATTTCGGATGACAGTGGATGGAGATCAAAATCAAGAAAGCATCAAGAGACATTTGGAAAAGAGTTGGTTATGACGTCAGACGAAGCATCAATGAAGAATTCAATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCTAATGATAAGCGATCTAAGCAGGATGTATTTACTAGTGAGCCAGAGCCAGCGGAGCACAATGGTATCTGGGCATTTGAGGAGAATGGCAAAATGTATCTGGAAATCAGTGACAGGGCTCCAGCTGGCACGAAGATGTGCCCTGCTCTAGCGGGGAAAGTCTAA 4368 0.4334 MPGGRCHRRRKMKGRGAEGGCGTEDMPCPVSRVPVESLGTQPRNSDNSTALEIDYYSQAIKALSERSPFDVAEETSTSTVPTLPSGWASFLNRHSESRRFHKKSHSGADKKSSRACEKLRSSSIWIETEDYFRHLKLPDIDTLLEASSSFCLAARKCFYVPPVGNAPRSNVASYEDDKETDGNLNSEDVKNENRVMESNGVADGVFAQDDKGRDAFDSSSSLEWLLGCRNKISLIPERPSKRRKLLGGESGLDTFLMTSPCYGDSPLCHYCCRGDTGSESNQLIVCVICKVAVHKKCYGVQDDVDESWLCSWCQQKGDIYEMVHPCVLCPKKGGALKPVHRHAESVGSAQFAHLFCCLWIPEVYIEDLKKMEPVVNVGGVQETRKKLVCNICKVKFGACIRCSHGSCRSSFHPLCAREASHRMEVWAKKGLDNIELRAFCSKHSVIQENSTILPSGGSVAFGSGLSSADSLRAGTHYSLKIGCQNGDNIGIVSDGSPDKLSHSEPPDEMSDCQFNAHETSECSGLPQQNTAVGGRTDEIANASDSLGFALLLKKLIDRGKVDLKDVALEIGISSDTLSANINDSCMAPDVQLKIVNWLKSHVYTNAFQKSLKVKFKPANSSKEENGITDGSDTIQISDSELPDPVAVKSVPSRRRTTSNIRILKDNKMICSSGELSSENRIQMDKVKGGQSELENSETSNEASILDATEMKLTKSEDAFFDSQGNADKPGKIILSGGVSEEKLADRHHSSCSAADLPASGFMEIEGNSCYSNPYIHKKLSHIHDGVLSEDVICEREEENFYLDGLSVASGGSSYQNPEVTCSDICKADKVNTKQLVMARNMGLLESCPKDEVEGELIYFQHRLLQNAVARKKFADNLISSIAKSLPQEIDSTHQERWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAAASSRVSSLRKDAFEESVLPENLLKHTFSGRTGVCSQPMPRAKGTLSRVAMVRTSSEKHSDCGLPDADFSKEHPKLCDICRRSETILNPILICSGCKVAVHLDCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPCVVAECGICGGTTGAYRKSSDGHWVHAFCAEWVFESTFRRGQVNAVEGMETVLKGVDTCCICHRKHGVCLKCSYGHCQTTFHPSCARSAGFYMNVRAASGKLQHRAYCEKHGSEQRTKAESQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVAKSVLVHSPFVLPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRVQVDVTMDSDPKLDDDCSTSQSHYNHKIPERVQFSGKQIPQRASIVTRNISDDSGWRSKSRKHQETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKRSKQDVFTSEPEPAEHNGIWAFEENGKMYLEISDRAPAGTKMCPALAGKV 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0350 1455 SMART PHD_3 1012 1057 IPR001965 -
Lele04g0350 1455 SMART PHD_3 1133 1187 IPR001965 -
Lele04g0350 1455 SMART PHD_3 388 444 IPR001965 -
Lele04g0350 1455 SMART PHD_3 267 314 IPR001965 -
Lele04g0350 1455 SUPERFAMILY FYVE/PHD zinc finger 1003 1057 IPR011011 -
Lele04g0350 1455 ProSiteProfiles Zinc finger PHD-type profile. 1010 1059 IPR019787 -
Lele04g0350 1455 SUPERFAMILY FYVE/PHD zinc finger 260 315 IPR011011 -
Lele04g0350 1455 CDD ePHD 1081 1186 - -
Lele04g0350 1455 Pfam PHD-zinc-finger like domain 1080 1186 - -
Lele04g0350 1455 Pfam PHD-zinc-finger like domain 325 443 - -
Lele04g0350 1455 Coils Coil 906 926 - -
Lele04g0350 1455 Pfam PHD-finger 1024 1057 - -
Lele04g0350 1455 Pfam PHD-finger 281 313 - -
Lele04g0350 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 321 IPR013083 -
Lele04g0350 1455 ProSiteProfiles Extended PHD (ePHD) domain profile. 323 444 IPR034732 -
Lele04g0350 1455 ProSitePatterns Zinc finger PHD-type signature. 268 313 IPR019786 -
Lele04g0350 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1002 1060 IPR013083 -
Lele04g0350 1455 MobiDBLite consensus disorder prediction 618 652 - -
Lele04g0350 1455 ProSiteProfiles Zinc finger PHD-type profile. 265 316 IPR019787 -
Lele04g0350 1455 MobiDBLite consensus disorder prediction 1 49 - -
Lele04g0350 1455 ProSitePatterns Zinc finger PHD-type signature. 1013 1056 IPR019786 -
Lele04g0350 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 445 IPR013083 -
Lele04g0350 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1077 1189 IPR013083 -
Lele04g0350 1455 PANTHER PHD FINGER PROTEINS 92 949 - -
Lele04g0350 1455 Coils Coil 1207 1227 - -
Lele04g0350 1455 MobiDBLite consensus disorder prediction 621 638 - -
Lele04g0350 1455 ProSiteProfiles Extended PHD (ePHD) domain profile. 1078 1187 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0350 Lele-ChrLele04 2064943 2076136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0350 272 448 C2H2 Transcription Factor Family AT3G14740 31.667 1.54e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele04g0350 zf-HC5HC2H_2 9.5e-23 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0350 04 2064943 2076136 Lele04g0350 04 2064943 2076136 ECH
Lele02g0341 02 1959432 1970369 Lele04g0350 04 2064943 2076136 hybridization