Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0341 ATGAGCAAACCCAGAACCCAAAGGAAAGACTCCAAACATGTCAACCGAAACCAGAATCAACAACCCCAGAAAACAGAGAAACAAGCCTCCTGGGCAGCCATAAGAGGCCTATTGCCTTGTAGAACTGTCCAAATTCAGCAGCCGCCGCAGCTGGAAGTGAAACAACCAAAGCAGAAACAAGAGCAGAGGAAGCTACAAGAAGAAGAAGAAGCAGTCCCAGAAGAAAGCAGAAAGAAGTGCAAGAAAATGAGATGTTCTGGTTCACTCTGTAACAACACCAAGATCGTGGCAAGGCCTGAAACAGTGACTCCTGACACCAACAAGGTCAAAAGGGCGTCGCTTGCTGCATGTAACACGGCCAACAATGACGCTTCTCATTCTAACAGATCCTCGAAAGCTCCTCTGCGTGAACTGAACGGTGTGGTTGCGTCTGCCTCTTCTTCTAACTCTCTCTCTGTATCTTCAAACTCTTCTGTGAATGGGTCTTTTAGGGGAATGCCATTCAGGAGGTTCTCTGGTTGCTATGAGTGTCGAATGGTGGTTGACCCTCTTCTTCCTTTCACCAGAGACCCTTCTCTCAGGAGTAGCATTTACCCTTGCCCTCACTGTGGTGAGATCTTCATGAAACCTGAAAATTTAGAGCTTCATCAGGCTGTTAAACATGCAGTATCTGACCTGGGTCCAGAAGATACGAGCAAGAACATAGTGGAGATTATATTCCACTCAAGCTGGCTAAAGAAACAATCTCCAGTCTGCAAAATAGACCGCATCCTTAAAGTCCACAACACTCAGAGGACAATTACCAAATTCGAAGAGTACAGAGAGTCCATCAAAGCCAAAGCCATGAAGCTTCCAAAGAAGCACCCTCGTTGCATAGCAGATGGAAACGAGCTACTGAGGTTCCATTGCACGACCTGTTTATGCTCACTGGGCCTAAAAGGCTCCACTAGCCTCTGTAACTCAATACCACAGTGCAGCGTGTGTGGCATAATCAAGAATGGCTTCAAGGTGGTCGCCGCCGGTGGAAAAGAGATACTGACGACGGCGACGAGTGGGAAAGCACACGACAGAGCCGAGGTTTCAGATGATGAGAATAATGAGAAGAGAGCAATGCTGGTATGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATATAGAAGGAGGAGGAATAATGAGCACTGAAGAGTATGATTCTTTTGCAGGAGAAGTTGGGGCTTATTCCAATTTGGAAGAGTTGTATGTGTCCAATCCTAGAGCTATTTTGCCCTGCTTCGTTGTTTTCTACTCTGGTTTTTGA 1296 0.4668 MSKPRTQRKDSKHVNRNQNQQPQKTEKQASWAAIRGLLPCRTVQIQQPPQLEVKQPKQKQEQRKLQEEEEAVPEESRKKCKKMRCSGSLCNNTKIVARPETVTPDTNKVKRASLAACNTANNDASHSNRSSKAPLRELNGVVASASSSNSLSVSSNSSVNGSFRGMPFRRFSGCYECRMVVDPLLPFTRDPSLRSSIYPCPHCGEIFMKPENLELHQAVKHAVSDLGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTITKFEEYRESIKAKAMKLPKKHPRCIADGNELLRFHCTTCLCSLGLKGSTSLCNSIPQCSVCGIIKNGFKVVAAGGKEILTTATSGKAHDRAEVSDDENNEKRAMLVCRVIAGRVKKNIEGGGIMSTEEYDSFAGEVGAYSNLEELYVSNPRAILPCFVVFYSGF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0341 431 SUPERFAMILY ADP-ribosylation 224 430 - -
Lele04g0341 431 ProSitePatterns Zinc finger C2H2 type domain signature. 200 221 IPR013087 -
Lele04g0341 431 Gene3D - 222 429 - -
Lele04g0341 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 82 428 - -
Lele04g0341 431 SMART c2h2final6 198 221 IPR013087 -
Lele04g0341 431 Coils Coil 58 78 - -
Lele04g0341 431 MobiDBLite consensus disorder prediction 1 32 - -
Lele04g0341 431 MobiDBLite consensus disorder prediction 56 78 - -
Lele04g0341 431 MobiDBLite consensus disorder prediction 46 78 - -
Lele04g0341 431 MobiDBLite consensus disorder prediction 1 15 - -
Lele04g0341 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 222 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0341 Lele-ChrLele04 1994983 1996396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0341 163 428 C2H2 Transcription Factor Family AT1G75710 54.082 8.95e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0341 None None None