Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0329 ATGTCCCTGAGCCCTCCTCGCCGAAGGACGAATGGCGAACCCAGGACGAACCTCTTCTATTGGTGCTACCAGTGCAACCGAATGGTCCGTGTTCCCTCCCCAGATTCATCCGACATTACCTGTCCACTTTGTTCTGGCCAGTTCCTCTGCGAAATCAACTTCTCAAGGCCTAGACTGGTCTTGGACTTTACAGACCACGATCCATCACCTGCAGCCCGCTTGTTAGAAGCCCTCTCTCTGTTGCTTGACCCGCCAATTAGGCAGTTTGATGGCCGTCTCCACGATCCCCAAGCTCGACCTCCACGCTTCCGTTGGATTCAGGGGCGTCAGCCATCCCGCCCACGAGAAGGCATACCTCATGCCGTCTCCGATGGCGAAATTCCCGTCCGCCGCGCACGTCGACGACATCGTCGGGCTGCTCAGGGAGCTGGGGAATCCGACGCAGATGTTCCAGTCCCAGAACCTGAAATCCTTCCTCGTCCTCGGACTTGGCTAATTCTTCCACCTATAGATCCGTCTGACCCATTGGAATCGATTCCGCGACGACAAAACCTTATACCGCGCGGTGTTGACCCCAGAGACTACTACTTTGGTCCTGGTCTGGGGGAACTGATTGACCAGTTGACGGAAAATGACAGGCCAGGGGCACCGCCGGCTTCGGAGAGAGCTATCGATGCGATTCCGAGTGTGAAAATCTCGGAGGGCCATCTGAAGGAGAACTCATACTGCCCGGTTTGCCAGGAAGAGTTTGAACTGGGAGGGGATGCGAGGGAATTGCCATGCAAGCACATATACCATTCAGATTGCATTGTTCCTTGGCTAAGGCTTCACAATTCCTGCCCTGTTTGCCGGCTTGAGGTGCCTGTGCCAGAGGCTTCGGACTCCGGTGAACCCAGTGGCGGAGAAGGCAGGCTGCGAAGGTGCTGGAGATGGAGTCAGATTCAACTGGCTTCTTTGTGGCCTTTCCACGGGAGGCATCGACGGATTCGTCCAGAAGGAGAGAATAATGTAATTGCTTCTGCAACGGGAGCGAGTGCAGGGCGGATCCCATGCTGTATTCTTTAG 1065 0.5559 MSLSPPRRRTNGEPRTNLFYWCYQCNRMVRVPSPDSSDITCPLCSGQFLCEINFSRPRLVLDFTDHDPSPAARLLEALSLLLDPPIRQFDGRLHDPQARPPRFRWIQGRQPSRPREGIPHAVSDGEIPVRRARRRHRRAAQGAGESDADVPVPEPEILPRPRTWLILPPIDPSDPLESIPRRQNLIPRGVDPRDYYFGPGLGELIDQLTENDRPGAPPASERAIDAIPSVKISEGHLKENSYCPVCQEEFELGGDARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVPEASDSGEPSGGEGRLRRCWRWSQIQLASLWPFHGRHRRIRPEGENNVIASATGASAGRIPCCIL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0329 354 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Lele04g0329 354 FunFam E3 ubiquitin-protein ligase RING1-like 207 290 - -
Lele04g0329 354 MobiDBLite consensus disorder prediction 135 155 - -
Lele04g0329 354 CDD RING-H2_RNF126_like 243 284 - -
Lele04g0329 354 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Lele04g0329 354 Pfam Ring finger domain 242 284 IPR001841 -
Lele04g0329 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 288 - -
Lele04g0329 354 SUPERFAMILY RING/U-box 223 290 - -
Lele04g0329 354 SMART ring_2 243 283 IPR001841 -
Lele04g0329 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 290 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0329 Lele-ChrLele04 1912619 1913966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0329 215 322 C3H Transcription Factor Family AT1G68180 43.636 1.73e-24 98.2