Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0328 ATGGTCAAGAGAGGGAACAAGATCCACACAGAAACATCATCAAAAGCAATGCAATCTCAATCTTCGTCAGCATCATCGGATGGGAAAAGGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTGGGATCTTATTCAACCCCAGAGGCTGCAGCTCGAGCCTACGATGCTGCACTTTTATGCCTCAAGGGTTCTTCAGCTAATCTCAACTTCCCTTCAAGTTCTTCACACTATGTTCCTCAGGATACTGTCATGTCTCCTAAATCAATCCAAAGAGTTGCTGCAGCGGCTGCTAATAGTTTTGCAGACAATGCCACAAGCCCACCTTCTTCCTCTGCATCAACATCATCGTCCTCACTCATCTCGTCGCCATCGATGTCGTCTGATCAAATCGACGATGATGTCTCACTAATCTCGTCATTTAGTTGTGATCAGAGTAACGAACCAGTGTCTTTGATGGACTCTTATTGGTATAGCTTTGATGATTTACAATCCCCAAAGTATGTAAATCAAATGCTCGGTGGTAATTTGTTTGATATTGATCCAACCCAGCTGCTGGAGGATGATTTCTGCGAAGAAAGTGATATTCGTTTGTGGAGCTTCTGCTGA 657 0.4399 MVKRGNKIHTETSSKAMQSQSSSASSDGKRKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPSSSSHYVPQDTVMSPKSIQRVAAAAANSFADNATSPPSSSASTSSSSLISSPSMSSDQIDDDVSLISSFSCDQSNEPVSLMDSYWYSFDDLQSPKYVNQMLGGNLFDIDPTQLLEDDFCEESDIRLWSFC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0328 218 FunFam ethylene-responsive transcription factor ERF014-like 30 90 - -
Lele04g0328 218 CDD AP2 31 90 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 MobiDBLite consensus disorder prediction 1 33 - -
Lele04g0328 218 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 MobiDBLite consensus disorder prediction 11 28 - -
Lele04g0328 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 161 - -
Lele04g0328 218 MobiDBLite consensus disorder prediction 117 144 - -
Lele04g0328 218 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Lele04g0328 218 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Lele04g0328 218 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0328 Lele-ChrLele04 1909013 1909669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0328 1 217 AP2-EREBP Transcription Factor Family AT1G21910 48.425 1.42e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele04g0328 AP2 3.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0328 04 1909013 1909669 Lele04g0328 04 1909013 1909669 ECH
Lele01g0323 01 1856669 1857355 Lele04g0328 04 1909013 1909669 hybridization
Lele02g0318 02 1793370 1794026 Lele04g0328 04 1909013 1909669 hybridization