Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0288 ATGGCGCCAATGGTTCAGACCTCCCAGCCATGGGTGGAGAAATATCGGCCAAAGCAAGTTAAAGATGTTGCCCACCAGGATGAAGTGGTTCGAGTACTCACAAACACCCTCGAAACCGGAAGTTGCCCGCACATGCTCTTCTATGGTCCACCCGGCACTGGAAAGACCACAACTGCACTTGCGATCGCCCGTGAGCTCTTCGGATCTGAGCTTTACAAGTTGAGGGTGCTGGAACTGAATGCGAGTGATGACCGTGGGATTAATGTTGTGCGGACAAAGATTAAGGATTTTGCTGGTTTGTCTGTTAGTACTAATCAGCATAAGAGTGGTTATCCATGCCCGCCATATAAGATTATTGTTCTAGACGAGGCAGATTCAATGACCGAAGATGCTCAGAATGCTCTGCGTCGTACAATGGAAACTTACTCTAAGATTACAAGGTTCTTTTTCATATGCAATTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTTAAGCCCCTGTCAGAAGAAATCATGAGCAATCGGATACTGTATATTTGCAACAAAGAAGGGCTTAATCTTGATTCTGAGGCTCTTTCAACCCTTAGTTCCATTTCTCAAGGAGATCTCCGTAGGGCTATTACATACTTACAGTCAGCTGCCCGCTTATTTGGATCTTCAATTTCTTCAAAGGACCTGGTTTCTGTCTCTGGGGTCATTCCAACAGAGGTTGTGCAAACATTTCTTGCAACATGTAAAAGTGGTAATTTTGATTTAGCAAACAAGGAAGTCAATGATTTCATCGCAGAAGGATATGCAGTCTCTCAGTTACTAATTCAGTTATTTGAGGCCATTGTTGAAGCAGATGATATATCAGATGAACAGAAGGCAAGAATATCGAAGAAATTGGGTGAAGCAGATAAGTGCCTTGTCGATGGTGCAGATGAATATTTGCAGCTTCTTGATGTGGCCAGCAATACAATTCGAGCTTGTTGTAACATGCCAGAGGGATTTTCTTTTGAGGGATAG 1029 0.4325 MAPMVQTSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARELFGSELYKLRVLELNASDDRGINVVRTKIKDFAGLSVSTNQHKSGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKITRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNKEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGVIPTEVVQTFLATCKSGNFDLANKEVNDFIAEGYAVSQLLIQLFEAIVEADDISDEQKARISKKLGEADKCLVDGADEYLQLLDVASNTIRACCNMPEGFSFEG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0288 342 SUPERFAMILY post-AAA+ oligomerization domain-like 241 325 IPR008921 GO:0003677|GO:0006260
Lele04g0288 342 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Lele04g0288 342 FunFam Replication factor C subunit 5 3 174 - -
Lele04g0288 342 FunFam Replication factor C subunit 4 176 239 - -
Lele04g0288 342 CDD HLD_clamp_RFC 174 233 - -
Lele04g0288 342 FunFam Replication factor C subunit 4 240 329 - -
Lele04g0288 342 Gene3D - 3 173 IPR027417 -
Lele04g0288 342 Gene3D - 240 329 - -
Lele04g0288 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 321 - -
Lele04g0288 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Lele04g0288 342 SMART AAA_5 41 174 IPR003593 -
Lele04g0288 342 CDD AAA 26 166 - -
Lele04g0288 342 Gene3D - 176 239 - -
Lele04g0288 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0288 Lele-ChrLele04 1707804 1711583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0288 1 338 Core DNA Replication Machinery Family AT1G21690 76.696 0.0 542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0288 04 1707804 1711583 Lele04g0288 04 1707804 1711583 ECH
Lele01g0293 01 1679338 1683161 Lele04g0288 04 1707804 1711583 hybridization