Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0287 ATGTCTACCCAGAATAGGCGTCCATCGTTTTCCTCCTCGACGACGTCGTCTTTGGCAAAGCGGCATGCATCGTCGTCGGAGAATGTGGGGAAGGCTGTGGCAGCCCCTTCACACTTGGCCAAGAAGCGAGCGCCTCTCAGTAACCTGACCAATCAAAAGAATGCTTCCTATAGTGCTTTGCGAAAGTCACTGCCATCATCTACTTTGGTAACCTGCACAACTAAAATTACTCAGACAGAGAAGAAATTCCCTGCTTGCACCACAAGCTCAGCCATTTCAGGGAATAAAATGCCTACTTCGTCAAATGCTAAATCGACTGCAGTTGTTTTCCCCAAGGCCACTTCTTGCCCACAAAGGGATGAAAGTGCTTCTGCTACTGTTGCTCTTCCTTGCAGCATTGATACTTCTATCAAATCAGATAGGATGTCAGTTTCTTTGGACGAGACGATGTCTACCTGCGACTCTTTCAAGAGTCACGAAATTGAATATATTGACAACAGCGATGTTTCAGCTCTTGATTCTATTGACAGAAAGACATTCAGCAATCTGAACATCTCAGATAATACGGAGGCACCAGTTAATGCTTGTAGTAGAGGCATACTTGTTGACTTGGAAAGAGATGGCAAATTTGTCAATATCGATGACAACTGCTTGGATCCCCAGCTTTGTGCACCCTATGCATGTGATATCTACAAGCATTTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGATTTCATGGAGCGAATTCAGAAGGACATAAATTCCAACATGCGTGCTATATTAGTTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGTCTAGGGCCTGTTACATTGTATTTGACAGTCAACTACTTAGATCGGTATCTTTCAGGGAATGTAATGAGTAGGCAAAAGTTACAATTACTTGGTGTTGCCTGCATGATGATTGCCGCTAAATATGAGGAGATTTGCGCGCCTCAGGTGGAGGAATATTGTTATATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTAAATTATCTGAAGTTTGAAATGACAGCTCCGACAATAAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTCAAGGAGCCAACGAGGTTGCATCATTACAATTAGAGTGCTTGACCAACTATATTGCTGAGTTGTCTTTACTGGAGTATACAATGCTCTGTTATGCCCCATCACTTATAGCTGCTTCTGCAATCTTCCTGGCGAAACTCATCCTTTTCCCTTCAAAAAAACCATGGAATTCCACATTGCAGCATTACACACTCTACAAGGCTTCTGATTTGCGTAACTGTGTGAAGGATCTCCATCGTCTATGTTATAACAGCCATAGTTCTGGCTTACCTGCAATTCCGGAGAAATACAGTCAACACAAGTACAAATATGTGGCAAAGAAGTCGTGTCCTCCGTCAATCCCTCGAGAACTTTTCCAAATTTACCTGATGAGTTTCCTGAGGCCCTCAGCATTGTACGCATTTCTTATTTCATGTCCTTCCTTCAGATGGATGCCCTGTCAGAGTTGGGGGTTTCTCCGATGGCCCGGTCTCGATGGCTTCTTGAGACTTTTGGTGATGTTCCTTCTCTGGTCTATGTTCTTGGAGCTTCGCTTCATACCTTCATCTTCTATGCACCCCACTCTTACAGTTGGTGATCGAATTATTGTCGAGAAGGCTTCGTATTACATCAAGAGTCCTGCCGCACAGGATATTGTATTATTCCAAGATCCGACACAGCTCTCTGAAGACAAAGCAGCCGATATATTTATCAAGAGAGTTGTTGCAAAAGCAGGAGATTTTGTTCAGGTTCGTGGTGGGTCTCTCTACCTCAACGGTGTTGCTCAGAAGGAAGATTATGTAGAAGCACAACCAACATACACGACGAACTTAACTTATGTACCAAACGGTCATGTTTATGTGTTGGGTGACAATCGAAACAAGAGCTATGATTCGCATGGGACCATTGCCTGTCAAAAACATAGTGGGAAGATATGTCATGTGTTGTCACAGACCCACAAACACCTGACAAATTATATTAACTTTGCTCGGTTAGCATATTCGTGTTTTGGCGTTTTCCTTGCCTTGTCGGATGGAGCAGGAGATACCGTAATGTGGCGTTTCCTTGCACGACTTGTCAACCAGAATTATGAGTGCAACTTGTTAGTGGGAAGTTTTCTTGTTCCAATAAGGAGACGGCCTGGGACAATAGGAATGCGCCAGCATGAATGGAGAAAAGAAAAGGACAAGAGTTTTGCTGGAATTCGGGCTCGTGAAGGGACTCCCAATCCCAAAAAGGGTGCTCCTTTAAAGAGACATTTCATTCTAACGTATTATTTTGTCCCTCTCTCTTCCTCTCTATATAACCCTCCCTCCTCTTACTCCACATACACCACACCTCTCTACTATATATATATATTCATTCGTTTCAAGATGGTTGAGAACGGCACCGCTCAGAACCGTCAGCCATTTCAAGTCTCCATTGCCGTGGCTCCACAAGGCGGCTCCAAGTGCTTCGACGACGATGGTCGCCTCAAGCGAACTGGGACTGTTTGGACCGCCAGCGCTCACATCATCACCGCTGTCATAGGCTCCGGTGTGCTGGCCCTCGCCTGGGCCATAGCTCAGCTCGGATGGATTGCGGGACCTGCCGTGATGATTCTCTTCTCTTTTGTCACTTACTACACCTCCACCCTCCTCTCTGCCTGCTATCGTTCCGGTGACTCTTATACCGGAAAGAGGAACTACACTTACATGGACGCCGTCCGATCAAACCTCGGCGGCTTTAAGGTCAAGATTTGTGGGCTGGTTCAGTATACGAACCTGTTCGGCGTCGCCATTGGATACACTATTGCAGCTTCCATAAGCATGATGGCAGTCCAAAAGTCAAACTGCATTCACAAGACCGGGAGCAAAGACGAGTGCAAAATGAATGGAGATATGTACATAATTGCATTTGGCATAGCGGAGATTGTCTTCTCTCAAATTCCAGACTTTGATCAGTTATGGTGGTTATCCATTGTAGCTGCCATCATGTCCTTCACCTACTCAATCATTGGGCTTGCCCTCGGTGTTGCTCAAACTGTAGAAAACAAGAAAATTGGAGGAAGCCTAACAGGGGTAAGCGTGGGTGCTGTGATAGACTCCCAAGTGGTGTCAGAGTCAAAGAAAATTTGGAGGAGCTTCCAAGCTCTGGGCGACATAGCCTTCGCCTACTCTTATTCAATGATCCTCATAGAAATCCAGGACACGCTGAAAGCTCCACCATCGGAAGCAAAAACAATGAAGAAGGCAACTTTTATCAGCGTAGTGGTGACCACATTTTTCTACATGCTATGTGGCTGCTTTGGCTACTCTGCATTCGGAGACCAAAGCCCAGGAAACCTACTCACCGGTTTCGGATTCTACAAACCTTATTGGCTCCTCGACATAGCAAATGTTGCCATTGTTGTCCACCTCGTCGGAGCTTACCAGGTTTATTGCCAACCCCTCTTCTCTTTCGTTGAGAAGGCAGCATCGGAAAAATTCCCAGAAAGTAATTTTGTCAACGAGCAAATTGAAATTCCAATCCCTGGTCTCCGATCGCCCTACCGACTCAACTTCTTCCGATTGGTGTGGAGGACCATTTTTGTGATCATAACCACCGTGATATCAATGCTTCTTCCATTCTTCGGCGGCGTTGTGGGTCTTCTCGGAGCCGTTGGGTTTTGGCCTCTCAGCGTGTATTTCCCGGTGGAGATGTACATAAACCAGAAGAGAGTACCAAGGTGGAGCACCAAATGGGTCTGCCTGCAAATGCTCAGTTTTGCTTGCCTCATCATTTCTTTGGCAGCCGCCGCCGGTTCTATTGCCGATATCATGGATCAACTTAAATCTTACAAGCCATTCGTGGTCACCTTATAA 3933 0.4551 MSTQNRRPSFSSSTTSSLAKRHASSSENVGKAVAAPSHLAKKRAPLSNLTNQKNASYSALRKSLPSSTLVTCTTKITQTEKKFPACTTSSAISGNKMPTSSNAKSTAVVFPKATSCPQRDESASATVALPCSIDTSIKSDRMSVSLDETMSTCDSFKSHEIEYIDNSDVSALDSIDRKTFSNLNISDNTEAPVNACSRGILVDLERDGKFVNIDDNCLDPQLCAPYACDIYKHLRASEAKKRPSTDFMERIQKDINSNMRAILVDWLVEVAEEYSLGPVTLYLTVNYLDRYLSGNVMSRQKLQLLGVACMMIAAKYEEICAPQVEEYCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGANEVASLQLECLTNYIAELSLLEYTMLCYAPSLIAASAIFLAKLILFPSKKPWNSTLQHYTLYKASDLRNCVKDLHRLCYNSHSSGLPAIPEKYSQHKYKYVAKKSCPPSIPRELFQIYLMSFLRPSALYAFLISCPSFRWMPCQSWGFLRWPGLDGFLRLLVMFLLWSMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIKSPAAQDIVLFQDPTQLSEDKAADIFIKRVVAKAGDFVQVRGGSLYLNGVAQKEDYVEAQPTYTTNLTYVPNGHVYVLGDNRNKSYDSHGTIACQKHSGKICHVLSQTHKHLTNYINFARLAYSCFGVFLALSDGAGDTVMWRFLARLVNQNYECNLLVGSFLVPIRRRPGTIGMRQHEWRKEKDKSFAGIRAREGTPNPKKGAPLKRHFILTYYFVPLSSSLYNPPSSYSTYTTPLYYIYIFIRFKMVENGTAQNRQPFQVSIAVAPQGGSKCFDDDGRLKRTGTVWTASAHIITAVIGSGVLALAWAIAQLGWIAGPAVMILFSFVTYYTSTLLSACYRSGDSYTGKRNYTYMDAVRSNLGGFKVKICGLVQYTNLFGVAIGYTIAASISMMAVQKSNCIHKTGSKDECKMNGDMYIIAFGIAEIVFSQIPDFDQLWWLSIVAAIMSFTYSIIGLALGVAQTVENKKIGGSLTGVSVGAVIDSQVVSESKKIWRSFQALGDIAFAYSYSMILIEIQDTLKAPPSEAKTMKKATFISVVVTTFFYMLCGCFGYSAFGDQSPGNLLTGFGFYKPYWLLDIANVAIVVHLVGAYQVYCQPLFSFVEKAASEKFPESNFVNEQIEIPIPGLRSPYRLNFFRLVWRTIFVIITTVISMLLPFFGGVVGLLGAVGFWPLSVYFPVEMYINQKRVPRWSTKWVCLQMLSFACLIISLAAAAGSIADIMDQLKSYKPFVVTL 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0287 1310 FunFam Mitotic cyclin 6 243 343 - -
Lele04g0287 1310 TIGRFAM sigpep_I_bact: signal peptidase I 533 676 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0287 1310 MobiDBLite consensus disorder prediction 1 50 - -
Lele04g0287 1310 Pfam Signal peptidase, peptidase S26 531 675 IPR019533 GO:0004252|GO:0006465
Lele04g0287 1310 SMART cyclin_7 265 349 IPR013763 -
Lele04g0287 1310 SMART cyclin_7 362 450 IPR013763 -
Lele04g0287 1310 Gene3D - 229 477 - -
Lele04g0287 1310 Pfam Transmembrane amino acid transporter protein 857 1295 IPR013057 -
Lele04g0287 1310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 644 663 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0287 1310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 543 559 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0287 1310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 600 612 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0287 1310 MobiDBLite consensus disorder prediction 1 24 - -
Lele04g0287 1310 PANTHER OS05G0424000 PROTEIN-RELATED 852 1294 - -
Lele04g0287 1310 CDD CYCLIN 356 449 IPR013763 -
Lele04g0287 1310 FunFam Amino acid permease 6 854 1300 - -
Lele04g0287 1310 FunFam Cyclin A1 345 477 - -
Lele04g0287 1310 ProSitePatterns Signal peptidases I signature 3. 649 662 IPR019758 GO:0004252|GO:0016020
Lele04g0287 1310 Gene3D Umud Fragment, subunit A 552 683 - -
Lele04g0287 1310 SMART Cyclin_C_2 358 481 IPR004367 -
Lele04g0287 1310 SUPERFAMILY Cyclin-like 358 483 IPR036915 -
Lele04g0287 1310 CDD S26_SPase_I 546 662 IPR019533 GO:0004252|GO:0006465
Lele04g0287 1310 Gene3D - 243 356 - -
Lele04g0287 1310 CDD CYCLIN 259 348 IPR013763 -
Lele04g0287 1310 Pfam Cyclin, C-terminal domain 358 479 IPR004367 -
Lele04g0287 1310 Pfam Cyclin, N-terminal domain 229 355 IPR006671 -
Lele04g0287 1310 SUPERFAMILY Cyclin-like 219 355 IPR036915 -
Lele04g0287 1310 SUPERFAMILY LexA/Signal peptidase 543 663 IPR036286 -
Lele04g0287 1310 ProSitePatterns Cyclins signature. 260 291 IPR006671 -
Lele04g0287 1310 ProSitePatterns Signal peptidases I serine active site. 552 559 IPR019756 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0287 Lele-ChrLele04 1687862 1705313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0287 829 1306 Organic Solute Cotransporters AT1G77380 73.013 0.0 728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0287 04 1687862 1705313 Lele25g0240 25 1435822 1438012 CCT
Lele04g0287 04 1687862 1705313 Lele26g0249 26 1483917 1489295 CCT
Lele04g0287 04 1687862 1705313 Lele27g1847 27 23290079 23295848 CCT
Lele04g0287 04 1687862 1705313 Lele28g0262 28 1546283 1551643 CCT
Lele04g0287 04 1687862 1705313 Lele04g0287 04 1687862 1705313 ECH
Lele01g0292 01 1667583 1675444 Lele04g0287 04 1687862 1705313 hybridization
Lele02g0280 02 1599871 1607278 Lele04g0287 04 1687862 1705313 hybridization