Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0279 ATGGATAATTTAACAGCACAACATAGTCAAGAAAAGGAAAATGGGAAATTGCAATCTGCAGCATCATCTGGACTTCCAGTTTCATGTATGCCTGGTGTTTGCTATGCTGATCTTGTGGACGGAGATCTAGATGTTACACAGTCAGAAAACACTTCTATTTTTGTTAATGGGACAGATCCTGAAGCACCTCCAGCTCAACCCAAAAATGAACCAAACCTTGACAGCGCTATAGCTAGAGATTCTGAATCTGATGATAATGACCTGTACCTATCAGAGTGCAGAATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAGCTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAGTGACAAGTTGACCCACATAGTCATTGGAACCCCTTCGGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTTGGGGTATCATCTACGTTGTTAAAACTACATGGCTGGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAAGAGGCACATTGCGCAAGATCTTCTTCTTCCAAAAGGTTCAGCATCTTTTGTGAAAGGATCTGTAACTGGCATTATGGGCATGAATAAAAGTAAAGGCCCCAGCACTCATCAAAGCTTGCAGGCTGATCAGGTGATAACTAGTATGGACTCTAGATTTGTAATACCATTATCTGCGGAGAAAAAAGAAGAAAAGAAGCTGGAGATTGATGTGACACAGCAAATGCAACTTCCTGTCGTTAATAATAAAATGAATGATCAAAAGAAGATGCATAATGACTCTTCTCAGTGTGTGAAGTCATCAACAGTTTTCTGGGGGAGGACGTTCTGTTTTTCAAATTCTTTTCCTGAAGAGAGGAGAGATGAGATTATTCAATGGATAAGTCAAGGGCAAGGAGAGGTAGTAAATGGGCACAGAAAACAGAATGCCCACTGTACTATTGAATGTCATGGTGTAACAAGGAGGTTGGAAGAAATTTCCCAAACTACATATATTTCCAGTCATTGGATACGATCTTGTTTAGAGAATGACTGCTTGCTCGATGTTGATAGTCACATTCTTTATTCTCCACTGCCTTGCCGCATACCCTTGCCTGGATTTGAAAGCTTTCGGTTTTGTGTTTCTCAATACGAGGGGAAAGACAGAATGCTTCTAAGGAACTTGTGCTTTGTTCTCGGAGCTACATTTGTGGAGAAGTTGTCAAAGAAAGTCACACATTTATTGTGTAAATTCATCAATGGGCCCAAGTACGAGGCTGCTTGTAAGTGGGGGATCCAAGTGGTTACCTCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTCCTGTTGATCACTTTTTACCAAAAGAAGTTTCTGTTCAAGATCAAGAGAACCAAGAGGCAGGAGTTTTTACCGCTAGTCAATTTCCTAACCCGGCTGACAGCATAAGTGGAGACAGCTCTGCCCAGTTTTTAAGTCGATCAAAAAATTTGAGAAACATACCGAATCAAAATGCAGGTAGTCAAGTCGACAATTATGGGGTTGATGCTAAAATATCAAGTGTTCACTGCAAAAAGGCAAGGCTTTTGGAAGAGCCTGGCCTGTATGATACAGTGCCTTCTGCTGTAGCTTCAGCTACCCCTATCTACGGTATGAGTTCTACAGGAAACAATATGCTAATAGATACTAGTGAGGTTTCTCCTGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTATTAGAGCAGACAAGTAAGATGCATGATCAGACATCCCCAGGGAAGACCGTGAATAAGCGAAATGTATCCTTCAAAACTAGGAAAGTTAATTCATTGTACATTTATTTTGTTAGTTTTTGTATTGAGCTTATGATATTTTCTTCAGAAGTAGCAGAAACGAGGATAATGATGATGCTTCTCGGGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTTATCGACAGAGTCCGAACACGTGGTAGTATGGCTTGAAGTATTAGGACAGCCCTTGAAGGAAGATCTAGAAGCATGA 2094 0.4035 MDNLTAQHSQEKENGKLQSAASSGLPVSCMPGVCYADLVDGDLDVTQSENTSIFVNGTDPEAPPAQPKNEPNLDSAIARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLSDKLTHIVIGTPSEIEKKDVRSLAAWGIIYVVKTTWLEDCDREKKEVPVLKRHIAQDLLLPKGSASFVKGSVTGIMGMNKSKGPSTHQSLQADQVITSMDSRFVIPLSAEKKEEKKLEIDVTQQMQLPVVNNKMNDQKKMHNDSSQCVKSSTVFWGRTFCFSNSFPEERRDEIIQWISQGQGEVVNGHRKQNAHCTIECHGVTRRLEEISQTTYISSHWIRSCLENDCLLDVDSHILYSPLPCRIPLPGFESFRFCVSQYEGKDRMLLRNLCFVLGATFVEKLSKKVTHLLCKFINGPKYEAACKWGIQVVTSEWIFECVKQNKVVPVDHFLPKEVSVQDQENQEAGVFTASQFPNPADSISGDSSAQFLSRSKNLRNIPNQNAGSQVDNYGVDAKISSVHCKKARLLEEPGLYDTVPSAVASATPIYGMSSTGNNMLIDTSEVSPAVPDVAAAIEDLLEQTSKMHDQTSPGKTVNKRNVSFKTRKVNSLYIYFVSFCIELMIFSSEVAETRIMMMLLGMEEQLMIILVKHKQNLRLLVMKKICLEDKCLSTESEHVVVWLEVLGQPLKEDLEA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0279 697 Pfam twin BRCT domain 377 438 IPR001357 -
Lele04g0279 697 SUPERFAMILY BRCT domain 84 171 IPR036420 -
Lele04g0279 697 MobiDBLite consensus disorder prediction 1 23 - -
Lele04g0279 697 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 606 - -
Lele04g0279 697 Gene3D BRCT domain 269 366 IPR036420 -
Lele04g0279 697 Pfam BRCA1 C Terminus (BRCT) domain 87 163 IPR001357 -
Lele04g0279 697 Gene3D BRCT domain 368 460 IPR036420 -
Lele04g0279 697 SUPERFAMILY BRCT domain 369 457 IPR036420 -
Lele04g0279 697 CDD BRCT_TopBP1_rpt2_like 371 446 - -
Lele04g0279 697 ProSiteProfiles BRCT domain profile. 373 456 IPR001357 -
Lele04g0279 697 ProSiteProfiles BRCT domain profile. 272 360 IPR001357 -
Lele04g0279 697 SMART BRCT_7 370 446 IPR001357 -
Lele04g0279 697 SMART BRCT_7 274 350 IPR001357 -
Lele04g0279 697 SMART BRCT_7 87 167 IPR001357 -
Lele04g0279 697 ProSiteProfiles BRCT domain profile. 85 177 IPR001357 -
Lele04g0279 697 FunFam Transcription coactivator 67 177 - -
Lele04g0279 697 Pfam BRCT domain, a BRCA1 C-terminus domain 274 357 IPR001357 -
Lele04g0279 697 MobiDBLite consensus disorder prediction 55 81 - -
Lele04g0279 697 FunFam Transcription coactivator 269 366 - -
Lele04g0279 697 Gene3D BRCT domain 72 175 IPR036420 -
Lele04g0279 697 SUPERFAMILY BRCT domain 274 362 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0279 Lele-ChrLele04 1637241 1642857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0279 40 618 Core DNA Replication Machinery Family AT1G77320 44.643 1.40e-146 451