Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele04g0278 | ATGCTGCGGACGAATGCATTCGAAGGCGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCGGAAGTCTTCGACACACTTCACGACGCGCTTAAGAATAACGGCGCATGTGTCCACCTTTGCTGCGACCCTTCACGCAATGGGCCTCACGACTATCACATCATATCTCACGATCATGAGAAACTTGAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACCTCTGCCTAAACAGGGTTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCCGGCTTTGAAATGGACGAGAAGATGAAGATAGGAGAGTTAGTAAAATCTATGGGAGGAATTCTGCATACTAAAGCATCGCTGGATGTAAATTTTGTGATTGTGAAAAATGTTTCAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAGTCACTTTTAATTGGTTAAAGCAATGCTCTATTGAGCATCGCATTGTTCCTCAGGAGTCATACAGGATTCTTCCCTTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCGGCAGATGAGCGCAGAAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCAGAGCTAACAAAGCAGTGCACACATTTGATTTCTGAAATATCCTTGCTATAG | 702 | 0.4416 | MLRTNAFEGANVFMSRNLVPPEVFDTLHDALKNNGACVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFEMDEKMKIGELVKSMGGILHTKASLDVNFVIVKNVSAAKYKWALNMLKKPIVTFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKQCTHLISEISLL | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele04g0278 | 233 | SUPERFAMILY | BRCT domain | 185 | 228 | IPR036420 | - | |
| Lele04g0278 | 233 | ProSiteProfiles | BRCT domain profile. | 99 | 183 | IPR001357 | - | |
| Lele04g0278 | 233 | ProSiteProfiles | BRCT domain profile. | 186 | 233 | IPR001357 | - | |
| Lele04g0278 | 233 | Gene3D | BRCT domain | 184 | 231 | IPR036420 | - | |
| Lele04g0278 | 233 | Pfam | twin BRCT domain | 189 | 229 | IPR001357 | - | |
| Lele04g0278 | 233 | CDD | BRCT_TopBP1_rpt2_like | 185 | 229 | - | - | |
| Lele04g0278 | 233 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 8 | 228 | - | - | |
| Lele04g0278 | 233 | SMART | BRCT_7 | 4 | 85 | IPR001357 | - | |
| Lele04g0278 | 233 | SMART | BRCT_7 | 96 | 173 | IPR001357 | - | |
| Lele04g0278 | 233 | Gene3D | BRCT domain | 41 | 93 | IPR036420 | - | |
| Lele04g0278 | 233 | Pfam | BRCA1 C Terminus (BRCT) domain | 100 | 169 | IPR001357 | - | |
| Lele04g0278 | 233 | SUPERFAMILY | BRCT domain | 58 | 183 | IPR036420 | - | |
| Lele04g0278 | 233 | CDD | BRCT | 102 | 169 | - | - | |
| Lele04g0278 | 233 | Gene3D | BRCT domain | 96 | 183 | IPR036420 | - | |
| Lele04g0278 | 233 | FunFam | Transcription coactivator | 96 | 184 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele04g0278 | Lele-ChrLele04 | 1633610 | 1636094 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele04g0278 | 1 | 231 | Core DNA Replication Machinery Family | AT1G77320 | 72.845 | 1.69e-115 | 351 |