Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0267 ATGTATGGGCATCTAGATAGTATGGATATGGTTAAGTTGATATTCGACAAGTCTCCTCACCGGAATTTAGTGTCTTGGACGCTGCTTGCCAGATTATACATTGATCGGGGAAAACCAAGTCCGACCCTTGATTTATTCCATCAGATGGTGGACATCGGGGTGCCCATTGATCCAGTTGCCTTAGCAACAGCAACCAGTGCCTTTGGATTGCTAAAATCTCTGCAAAAAGGAAAACTTGTGCACGAGATTGCTAAGAAATATGGATTAGAGTTTGATGTTTTAGTGAGTAATTCGCTCGTGAAAATGTATATAGATTGCGACAGTTTAAAAGATGCTCGGTTGATGTTTGATCAGATGCCTTTTAAGGATGTTATATCATGGACTTTAATGTTTCGTTCTTATGTGAAGATAGGAGGATTCAACGAAGGTCTCAAATTATTTCGACAGATGAACTTGAATGGTTTGAAGCCTGATTCACTCTCAGTCGCCAGCATTCTCCCTGCCTGCGGGAGAATCGCTTCCCATAAACACGGTAAAGAAATTCATGGCTATTTGCTTAGAAACGGGATTCAATTAAACCTGAAGCTCAAGAATGCACTAATGGACATGTATGTGAAATCAGGAGCTATCGCATGTGCTTCAAATATTTTTGCTGAACTGAACGGAAAAGATATGATTACATGGACCGTGATGATATTGGGCTATAGCCTACACGGTCAAGGGAAGCTTGGAGTTGATTTTTTCTGCCAGATGGGGAAAAATTCAAAGGCACGTATAGATAACACCACCTATGCTGCTGTCCTTCATGCATGTAGCACCGCACGCTTGGTTGAGGAAGGGAAGTTTTACTTCAACCGCATAGGGTCACCCACAGTGGCTCACTATGCTTCCATGGTTGCTCTGTTAGCACGAGCTGGGCTTTTTAACGAGGCGATGGCCTTTATTAAGGAACACAATATTGGAAAACATGCTGAGGTACAGAGAAAATTGCTAGGAGGGTGCAGGATTCACCGACAACACACACTAGGTAAGCGAGTGGCTGAGCAACTTTGTGATTTGGAACCTCTAAATGCTGATAATTACGTGCTACTTCTGAATTGGTATTCTGGGAATGCAAAGTGGCACATGGTAGATAAATTAAGGGAAACGATCAGAGACGTGGGTTTGAAACCCAGAAAAGCCTATTCTTGGATCGTGTTCAGGAACAAAGTTCATGTCTTTGGAACTGGGGATAGATCGCATCCAAGATCAGTGAGAATATATTCGGAATTACAGCGTTTCATGGGGGAAATGAGAGTCCAAGGAGTTGAGCCTATTTGGGATTTCAACCTTCATGATGTAGATGAAGAGCGTGAGGGCATTCAGATTGAACACGACGAACTAGATGAAGAGCGTGAGGGCATTCAGATTGAACACAGCGAACTATTAGCAATGTCCTTTGGGCTTATCAGTTCACGAGCTGGACCCATACGTGTTACAAAAAATCTTACGGTATGTCATGGCTGCTACGATTTTGCCGAGTTCATTTCCAAGACCACCGGAAGAGAAATCATTCTCAAGGACCCATACCTATTTCATCATTTTAGGGATGGATTTTGTTCATGTGAGGATTTCTGTCGGAAAAGCCCTTGCTTAAGCCGGAGGTCTGAACTGAAAGGGGGAATAGCATTCAAAGGTAAAAGAGTTGGGTTCTTTCACGGTCGAAGGATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTTCAGATAGCAATGATGTTAAAATGGGGGTTCAGCGCTTTAATAGTGAAGCTGTGAATAATGGGGTGTTAATTGCAGACAGGAACGATGTTGCTCAAGGGGACTCTAGTGTAGTTGAAACCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAAAAGGACGTAAGCATGTAAAGTTGAATTCAAAAAGCAAAGCTCGGGAAGATCGCAGAACATACTCAGCAGCTGCAAGTCACATAGCAAGCCAGGCTGTAAAGAAACCGCGTAATGTAGCTGTAGGAAATACTTTGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCACTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCCTGAGGGAAGCTCTCATGCGCCATCCTAAAATTAGTTGCGCCACTACTTTAAAGGAAACTTGTAAAATTGACAAAGTTGGACAAGATTACTCTCCGCACTTTGACCTGATGTCTCATAGATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATGTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAGCTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAACAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCGAGAACTTTCTACTGTGAGCAGGCTGGAGTTTCAGTGCATAGCACATTCAAAGATGGAAAGCAGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCATGTATAAGATTTGCACTTGCAGGCATTGTGGTAACAAGGCAAATGGGAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATGTTTCATATCTCCTGTATTGAGCCTCCTGTCAAAGAGATACCCCATAAGAGCTGGTACTGTGCCAAATGCACGGCCAGTGGAATTGGATCTCCACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCTTGTAAACGAGGAAACAATTAATGAATTGGAAGACAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGAAAAATTGACATGATCTGCAAAGTTTGTGAAAATGAAGTTGATGGTGAAAGAATCAGAATCTGTGGTCACTCCGCCTGCTCTAAGTACTATCATGTAAGGTGTTTGACAAGTAAACAGTTAACATCATATGGTCCCTGCTGGTACTGTCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATGATCAGATTGTTCTCTGTGATGGCTGTGATGATGCTTACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCAAAAGGAAAATGGTTCTGCAGAAAATGTGATACAGGGTTACAAGTGATACGACGGGCGAAAAAGTTGTACGAGAGTAAAAAGCAGAGAAAAGCGAGTGAAGATGGTTCTAAACCAGGCAATAGATTTGAAAAAAATTGGAACAATAAACATGGACGAGATTTGGATAAAGGTGGAGGGATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAGGAGGACTTGGCTGCAATCCGGACGTTATGA 3606 0.4204 MYGHLDSMDMVKLIFDKSPHRNLVSWTLLARLYIDRGKPSPTLDLFHQMVDIGVPIDPVALATATSAFGLLKSLQKGKLVHEIAKKYGLEFDVLVSNSLVKMYIDCDSLKDARLMFDQMPFKDVISWTLMFRSYVKIGGFNEGLKLFRQMNLNGLKPDSLSVASILPACGRIASHKHGKEIHGYLLRNGIQLNLKLKNALMDMYVKSGAIACASNIFAELNGKDMITWTVMILGYSLHGQGKLGVDFFCQMGKNSKARIDNTTYAAVLHACSTARLVEEGKFYFNRIGSPTVAHYASMVALLARAGLFNEAMAFIKEHNIGKHAEVQRKLLGGCRIHRQHTLGKRVAEQLCDLEPLNADNYVLLLNWYSGNAKWHMVDKLRETIRDVGLKPRKAYSWIVFRNKVHVFGTGDRSHPRSVRIYSELQRFMGEMRVQGVEPIWDFNLHDVDEEREGIQIEHDELDEEREGIQIEHSELLAMSFGLISSRAGPIRVTKNLTVCHGCYDFAEFISKTTGREIILKDPYLFHHFRDGFCSCEDFCRKSPCLSRRSELKGGIAFKGKRVGFFHGRRMETEDGTSNGDNTECSEAVQCLKSEAVNNGVSDSNDVKMGVQRFNSEAVNNGVLIADRNDVAQGDSSVVETFRTYKRRKHVKLNSKGRKHVKLNSKSKAREDRRTYSAAASHIASQAVKKPRNVAVGNTLDKHSHAHWGNVVLMHLYQSLGDDKGGIEGCLREALMRHPKISCATTLKETCKIDKVGQDYSPHFDLMSHRLRKEVNGHANVLCNGSCNESDGPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPEAVFDFSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGVSVHSTFKDGKQEFCNQESDSHMKPEQTEDCGMYKICTCRHCGNKANGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCAKCTASGIGSPHENCVVCERLNDSKTLNFDESFLVNEETINELEDNSNCTYDGAQASRRGKIDMICKVCENEVDGERIRICGHSACSKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDDQIVLCDGCDDAYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIRRAKKLYESKKQRKASEDGSKPGNRFEKNWNNKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRTL 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0267 1201 Pfam PHD-finger 1084 1129 IPR019787 -
Lele04g0267 1201 Pfam PHD-finger 929 975 IPR019787 -
Lele04g0267 1201 Pfam PPR repeat 125 154 IPR002885 -
Lele04g0267 1201 Pfam PPR repeat 226 253 IPR002885 -
Lele04g0267 1201 ProSiteProfiles Zinc finger PHD-type profile. 1081 1131 IPR019787 -
Lele04g0267 1201 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 461 - -
Lele04g0267 1201 FunFam Pentatricopeptide repeat-containing protein chloroplastic 75 175 - -
Lele04g0267 1201 ProSiteProfiles Zinc finger PHD-type profile. 926 976 IPR019787 -
Lele04g0267 1201 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Lele04g0267 1201 SUPERFAMILY FYVE/PHD zinc finger 1083 1136 IPR011011 -
Lele04g0267 1201 FunFam PHD finger protein EHD3 isoform A 816 977 - -
Lele04g0267 1201 Gene3D - 819 976 - -
Lele04g0267 1201 FunFam pentatricopeptide repeat-containing protein At2g33680 197 419 - -
Lele04g0267 1201 Coils Coil 444 471 - -
Lele04g0267 1201 ProSiteProfiles Zinc finger PHD-type profile. 1033 1085 IPR019787 -
Lele04g0267 1201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1088 1130 IPR013083 -
Lele04g0267 1201 SUPERFAMILY FYVE/PHD zinc finger 924 974 IPR011011 -
Lele04g0267 1201 MobiDBLite consensus disorder prediction 1145 1172 - -
Lele04g0267 1201 SMART PHD_3 1086 1129 IPR001965 -
Lele04g0267 1201 SMART PHD_3 928 974 IPR001965 -
Lele04g0267 1201 SMART PHD_3 1035 1083 IPR001965 -
Lele04g0267 1201 Pfam E motif 340 398 IPR046848 -
Lele04g0267 1201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1024 1087 IPR013083 -
Lele04g0267 1201 TIGRFAM PPR: pentatricopeptide repeat domain 125 159 IPR002885 -
Lele04g0267 1201 ProSiteProfiles Zinc finger RING-type profile. 1036 1082 IPR001841 -
Lele04g0267 1201 Pfam DYW family of nucleic acid deaminases 457 538 IPR032867 GO:0008270
Lele04g0267 1201 Gene3D Tetratricopeptide repeat domain 31 176 IPR011990 GO:0005515
Lele04g0267 1201 Gene3D Tetratricopeptide repeat domain 177 406 IPR011990 GO:0005515
Lele04g0267 1201 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0267 Lele-ChrLele04 1580470 1589679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0267 7 538 Glycoside Hydrolase AT3G49170 33.333 6.11e-86 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele04g0267 DYW_deaminase 2.7e-26 CL0109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0267 04 1580470 1589679 Lele04g0267 04 1580470 1589679 ECH
Lele01g0276 01 1547282 1555562 Lele04g0267 04 1580470 1589679 hybridization
Lele02g0261 02 1482699 1490216 Lele04g0267 04 1580470 1589679 hybridization