Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele04g0267 | ATGTATGGGCATCTAGATAGTATGGATATGGTTAAGTTGATATTCGACAAGTCTCCTCACCGGAATTTAGTGTCTTGGACGCTGCTTGCCAGATTATACATTGATCGGGGAAAACCAAGTCCGACCCTTGATTTATTCCATCAGATGGTGGACATCGGGGTGCCCATTGATCCAGTTGCCTTAGCAACAGCAACCAGTGCCTTTGGATTGCTAAAATCTCTGCAAAAAGGAAAACTTGTGCACGAGATTGCTAAGAAATATGGATTAGAGTTTGATGTTTTAGTGAGTAATTCGCTCGTGAAAATGTATATAGATTGCGACAGTTTAAAAGATGCTCGGTTGATGTTTGATCAGATGCCTTTTAAGGATGTTATATCATGGACTTTAATGTTTCGTTCTTATGTGAAGATAGGAGGATTCAACGAAGGTCTCAAATTATTTCGACAGATGAACTTGAATGGTTTGAAGCCTGATTCACTCTCAGTCGCCAGCATTCTCCCTGCCTGCGGGAGAATCGCTTCCCATAAACACGGTAAAGAAATTCATGGCTATTTGCTTAGAAACGGGATTCAATTAAACCTGAAGCTCAAGAATGCACTAATGGACATGTATGTGAAATCAGGAGCTATCGCATGTGCTTCAAATATTTTTGCTGAACTGAACGGAAAAGATATGATTACATGGACCGTGATGATATTGGGCTATAGCCTACACGGTCAAGGGAAGCTTGGAGTTGATTTTTTCTGCCAGATGGGGAAAAATTCAAAGGCACGTATAGATAACACCACCTATGCTGCTGTCCTTCATGCATGTAGCACCGCACGCTTGGTTGAGGAAGGGAAGTTTTACTTCAACCGCATAGGGTCACCCACAGTGGCTCACTATGCTTCCATGGTTGCTCTGTTAGCACGAGCTGGGCTTTTTAACGAGGCGATGGCCTTTATTAAGGAACACAATATTGGAAAACATGCTGAGGTACAGAGAAAATTGCTAGGAGGGTGCAGGATTCACCGACAACACACACTAGGTAAGCGAGTGGCTGAGCAACTTTGTGATTTGGAACCTCTAAATGCTGATAATTACGTGCTACTTCTGAATTGGTATTCTGGGAATGCAAAGTGGCACATGGTAGATAAATTAAGGGAAACGATCAGAGACGTGGGTTTGAAACCCAGAAAAGCCTATTCTTGGATCGTGTTCAGGAACAAAGTTCATGTCTTTGGAACTGGGGATAGATCGCATCCAAGATCAGTGAGAATATATTCGGAATTACAGCGTTTCATGGGGGAAATGAGAGTCCAAGGAGTTGAGCCTATTTGGGATTTCAACCTTCATGATGTAGATGAAGAGCGTGAGGGCATTCAGATTGAACACGACGAACTAGATGAAGAGCGTGAGGGCATTCAGATTGAACACAGCGAACTATTAGCAATGTCCTTTGGGCTTATCAGTTCACGAGCTGGACCCATACGTGTTACAAAAAATCTTACGGTATGTCATGGCTGCTACGATTTTGCCGAGTTCATTTCCAAGACCACCGGAAGAGAAATCATTCTCAAGGACCCATACCTATTTCATCATTTTAGGGATGGATTTTGTTCATGTGAGGATTTCTGTCGGAAAAGCCCTTGCTTAAGCCGGAGGTCTGAACTGAAAGGGGGAATAGCATTCAAAGGTAAAAGAGTTGGGTTCTTTCACGGTCGAAGGATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTTCAGATAGCAATGATGTTAAAATGGGGGTTCAGCGCTTTAATAGTGAAGCTGTGAATAATGGGGTGTTAATTGCAGACAGGAACGATGTTGCTCAAGGGGACTCTAGTGTAGTTGAAACCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAAAAGGACGTAAGCATGTAAAGTTGAATTCAAAAAGCAAAGCTCGGGAAGATCGCAGAACATACTCAGCAGCTGCAAGTCACATAGCAAGCCAGGCTGTAAAGAAACCGCGTAATGTAGCTGTAGGAAATACTTTGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCACTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCCTGAGGGAAGCTCTCATGCGCCATCCTAAAATTAGTTGCGCCACTACTTTAAAGGAAACTTGTAAAATTGACAAAGTTGGACAAGATTACTCTCCGCACTTTGACCTGATGTCTCATAGATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATGTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAGCTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAACAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCGAGAACTTTCTACTGTGAGCAGGCTGGAGTTTCAGTGCATAGCACATTCAAAGATGGAAAGCAGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCATGTATAAGATTTGCACTTGCAGGCATTGTGGTAACAAGGCAAATGGGAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATGTTTCATATCTCCTGTATTGAGCCTCCTGTCAAAGAGATACCCCATAAGAGCTGGTACTGTGCCAAATGCACGGCCAGTGGAATTGGATCTCCACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCTTGTAAACGAGGAAACAATTAATGAATTGGAAGACAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGAAAAATTGACATGATCTGCAAAGTTTGTGAAAATGAAGTTGATGGTGAAAGAATCAGAATCTGTGGTCACTCCGCCTGCTCTAAGTACTATCATGTAAGGTGTTTGACAAGTAAACAGTTAACATCATATGGTCCCTGCTGGTACTGTCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATGATCAGATTGTTCTCTGTGATGGCTGTGATGATGCTTACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCAAAAGGAAAATGGTTCTGCAGAAAATGTGATACAGGGTTACAAGTGATACGACGGGCGAAAAAGTTGTACGAGAGTAAAAAGCAGAGAAAAGCGAGTGAAGATGGTTCTAAACCAGGCAATAGATTTGAAAAAAATTGGAACAATAAACATGGACGAGATTTGGATAAAGGTGGAGGGATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAGGAGGACTTGGCTGCAATCCGGACGTTATGA | 3606 | 0.4204 | MYGHLDSMDMVKLIFDKSPHRNLVSWTLLARLYIDRGKPSPTLDLFHQMVDIGVPIDPVALATATSAFGLLKSLQKGKLVHEIAKKYGLEFDVLVSNSLVKMYIDCDSLKDARLMFDQMPFKDVISWTLMFRSYVKIGGFNEGLKLFRQMNLNGLKPDSLSVASILPACGRIASHKHGKEIHGYLLRNGIQLNLKLKNALMDMYVKSGAIACASNIFAELNGKDMITWTVMILGYSLHGQGKLGVDFFCQMGKNSKARIDNTTYAAVLHACSTARLVEEGKFYFNRIGSPTVAHYASMVALLARAGLFNEAMAFIKEHNIGKHAEVQRKLLGGCRIHRQHTLGKRVAEQLCDLEPLNADNYVLLLNWYSGNAKWHMVDKLRETIRDVGLKPRKAYSWIVFRNKVHVFGTGDRSHPRSVRIYSELQRFMGEMRVQGVEPIWDFNLHDVDEEREGIQIEHDELDEEREGIQIEHSELLAMSFGLISSRAGPIRVTKNLTVCHGCYDFAEFISKTTGREIILKDPYLFHHFRDGFCSCEDFCRKSPCLSRRSELKGGIAFKGKRVGFFHGRRMETEDGTSNGDNTECSEAVQCLKSEAVNNGVSDSNDVKMGVQRFNSEAVNNGVLIADRNDVAQGDSSVVETFRTYKRRKHVKLNSKGRKHVKLNSKSKAREDRRTYSAAASHIASQAVKKPRNVAVGNTLDKHSHAHWGNVVLMHLYQSLGDDKGGIEGCLREALMRHPKISCATTLKETCKIDKVGQDYSPHFDLMSHRLRKEVNGHANVLCNGSCNESDGPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPEAVFDFSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGVSVHSTFKDGKQEFCNQESDSHMKPEQTEDCGMYKICTCRHCGNKANGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCAKCTASGIGSPHENCVVCERLNDSKTLNFDESFLVNEETINELEDNSNCTYDGAQASRRGKIDMICKVCENEVDGERIRICGHSACSKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDDQIVLCDGCDDAYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIRRAKKLYESKKQRKASEDGSKPGNRFEKNWNNKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRTL | 1201 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele04g0267 | 1201 | Pfam | PHD-finger | 1084 | 1129 | IPR019787 | - | |
Lele04g0267 | 1201 | Pfam | PHD-finger | 929 | 975 | IPR019787 | - | |
Lele04g0267 | 1201 | Pfam | PPR repeat | 125 | 154 | IPR002885 | - | |
Lele04g0267 | 1201 | Pfam | PPR repeat | 226 | 253 | IPR002885 | - | |
Lele04g0267 | 1201 | ProSiteProfiles | Zinc finger PHD-type profile. | 1081 | 1131 | IPR019787 | - | |
Lele04g0267 | 1201 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 461 | - | - | |
Lele04g0267 | 1201 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 75 | 175 | - | - | |
Lele04g0267 | 1201 | ProSiteProfiles | Zinc finger PHD-type profile. | 926 | 976 | IPR019787 | - | |
Lele04g0267 | 1201 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 123 | 157 | IPR002885 | - | |
Lele04g0267 | 1201 | SUPERFAMILY | FYVE/PHD zinc finger | 1083 | 1136 | IPR011011 | - | |
Lele04g0267 | 1201 | FunFam | PHD finger protein EHD3 isoform A | 816 | 977 | - | - | |
Lele04g0267 | 1201 | Gene3D | - | 819 | 976 | - | - | |
Lele04g0267 | 1201 | FunFam | pentatricopeptide repeat-containing protein At2g33680 | 197 | 419 | - | - | |
Lele04g0267 | 1201 | Coils | Coil | 444 | 471 | - | - | |
Lele04g0267 | 1201 | ProSiteProfiles | Zinc finger PHD-type profile. | 1033 | 1085 | IPR019787 | - | |
Lele04g0267 | 1201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1088 | 1130 | IPR013083 | - | |
Lele04g0267 | 1201 | SUPERFAMILY | FYVE/PHD zinc finger | 924 | 974 | IPR011011 | - | |
Lele04g0267 | 1201 | MobiDBLite | consensus disorder prediction | 1145 | 1172 | - | - | |
Lele04g0267 | 1201 | SMART | PHD_3 | 1086 | 1129 | IPR001965 | - | |
Lele04g0267 | 1201 | SMART | PHD_3 | 928 | 974 | IPR001965 | - | |
Lele04g0267 | 1201 | SMART | PHD_3 | 1035 | 1083 | IPR001965 | - | |
Lele04g0267 | 1201 | Pfam | E motif | 340 | 398 | IPR046848 | - | |
Lele04g0267 | 1201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1024 | 1087 | IPR013083 | - | |
Lele04g0267 | 1201 | TIGRFAM | PPR: pentatricopeptide repeat domain | 125 | 159 | IPR002885 | - | |
Lele04g0267 | 1201 | ProSiteProfiles | Zinc finger RING-type profile. | 1036 | 1082 | IPR001841 | - | |
Lele04g0267 | 1201 | Pfam | DYW family of nucleic acid deaminases | 457 | 538 | IPR032867 | GO:0008270 | |
Lele04g0267 | 1201 | Gene3D | Tetratricopeptide repeat domain | 31 | 176 | IPR011990 | GO:0005515 | |
Lele04g0267 | 1201 | Gene3D | Tetratricopeptide repeat domain | 177 | 406 | IPR011990 | GO:0005515 | |
Lele04g0267 | 1201 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 22 | 56 | IPR002885 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele04g0267 | Lele-ChrLele04 | 1580470 | 1589679 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele04g0267 | 7 | 538 | Glycoside Hydrolase | AT3G49170 | 33.333 | 6.11e-86 | 296 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Lele04g0267 | DYW_deaminase | 2.7e-26 | CL0109 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele04g0267 | 04 | 1580470 | 1589679 | Lele04g0267 | 04 | 1580470 | 1589679 | ECH | |
Lele01g0276 | 01 | 1547282 | 1555562 | Lele04g0267 | 04 | 1580470 | 1589679 | hybridization | |
Lele02g0261 | 02 | 1482699 | 1490216 | Lele04g0267 | 04 | 1580470 | 1589679 | hybridization |