Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0246 ATGTACATGACAGATTCTTGCTCCAGTGAGAGTTATGACAAGTACTTCCATGATTCACCAACAGAAGAACTGATAGAACCATCTAGTTCTGGGGTCTCAAGCAATTCATTTCGCCCGAACGATGCTTCTCCTTACCAGCCTAGAGCCAGTTCAGGAGCTTCCATGGTTGCTAATAACCCATTTGATACTTCTTTCATGTCCACCAGGCGTCATGGTGATGCCTATTATCAATCCAATTTTAGATCAGATTTCTCAGAAAATGAAAGCCTGGATGCACTTGACTTCAATGGTCAAATGAGATTAAAACTGCAAGAATTAGAGAGGGCACCGCTTGATGATGAAGAAGACATATTTGAGACTGCTCAAAGCATGGAAATTGACCCAGCTGAGTGGGCTGGCCCCATTCAGAACATGCAGCTCCATGACTCACCAAAGGAGTCTTCATCCTCAGATTATAATCTCAGCAGCATCAGTAGCAACAAAGAAGTATCACATATCTCTCGTTTGAGCCCCAGGCAAATGCTTCTTGAATGTGCAGGTGTACTTTCAGAAGGAAATTTAAAGGAGGCGTCGGATATGATAAATAATCTCCGGCAGATGGTATCAATTCAGGGAGATCCTCCCCAAAGAATTGCAGCCTATATGGTTGAAGGACTTGCAGCTCGCTTGGCTGAGTCTGGAAAGTGTATTTACAAAGCTCTGAAATGCAAGGAGCCTCCTTCTTCAGATCGTCTGGCAGCAATGCAGATATTGTTTGAAGTGTGCCCATGCTTTAAATTTGGATTCATTGCTGCAAATGGCGCAATCACAGAGGCAGTGAAAGATGAAACCCAGGTGCACATAGTAGATTTTGACATCAACCAAGGAAGCCAATACATAACTCTACTACAAACACTCGTTTCAAGGCCAGGCAAGCCACCCCACGTGAGATTGACCGGAGTTGATGATCCAGAATCTGTACAACGATCTGTTGGAGGCCTGAAGATCATAGGACAGAGACTTGAGAAGCTAGCAGAAGCACTGGAGCTGCCGTTCGAGTTTCGAGCGGTGCCGTCGAGGACATCACTCGTCACCCCTTCAATGCTCAAATGTCGGCCTGGGGAAGCACTTGTGGTGAACTTTGCATTTCAGCTGCACCACATGCCGGATGAGAGTGTTTCCACAGTGAACGAGAGAGACCAACTCCTCCGCATGGTTAAGAGCCTAAAGCCAATACTTGTAACAGTTGTGGAACAAGATGTGAACACTAACACAACCCCTTTCTTCCCAAGATTCGTAGAAGCTTACAATTATTACTCTGCTGTTTTCGAGTCGCTTGATGCGACTCTTCCGAGGGAGAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCAAGGGACATTGTCAACATTGTTGCATGTGATGGTGAGGATCGGATTGAAAGGTACGAAGTTGCCGGGAAATGGAGGGCGAGAATGGCCATGGCTGGTTTCACTTCATCTCCACTGAGCAGTCACGTGACTGAGTCGATTCGGAAGCTCATCAGGCAGTATAGTGAGAGGTACAAGATGAAGGAGCAAATGGGTGCACTCCATTTTGGGTGGGAAGACAAGAACTTGATTGTAGCTTCGGCGTGGAGGTGA 1626 0.4625 MYMTDSCSSESYDKYFHDSPTEELIEPSSSGVSSNSFRPNDASPYQPRASSGASMVANNPFDTSFMSTRRHGDAYYQSNFRSDFSENESLDALDFNGQMRLKLQELERAPLDDEEDIFETAQSMEIDPAEWAGPIQNMQLHDSPKESSSSDYNLSSISSNKEVSHISRLSPRQMLLECAGVLSEGNLKEASDMINNLRQMVSIQGDPPQRIAAYMVEGLAARLAESGKCIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAITEAVKDETQVHIVDFDINQGSQYITLLQTLVSRPGKPPHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALELPFEFRAVPSRTSLVTPSMLKCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLKPILVTVVEQDVNTNTTPFFPRFVEAYNYYSAVFESLDATLPRESQDRMNVERQCLARDIVNIVACDGEDRIERYEVAGKWRARMAMAGFTSSPLSSHVTESIRKLIRQYSERYKMKEQMGALHFGWEDKNLIVASAWR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0246 541 MobiDBLite consensus disorder prediction 1 56 - -
Lele04g0246 541 ProSiteProfiles GRAS family profile. 162 541 IPR005202 -
Lele04g0246 541 MobiDBLite consensus disorder prediction 23 56 - -
Lele04g0246 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 144 536 IPR005202 -
Lele04g0246 541 Pfam GRAS domain family 172 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0246 Lele-ChrLele04 1462350 1463975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0246 5 541 GRAS Transcription Factor Family AT1G21450 65.193 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele04g0246 GRAS 7.9e-136 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0215 25 1275162 1276901 Lele04g0246 04 1462350 1463975 CCT
Lele04g0246 04 1462350 1463975 Lele04g0246 04 1462350 1463975 ECH
Lele01g0248 01 1406450 1408072 Lele04g0246 04 1462350 1463975 hybridization
Lele02g0240 02 1361568 1363193 Lele04g0246 04 1462350 1463975 hybridization