Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0216 ATGGAAGATATCTTTTCTGGTATTCTTGAAAAGGAACTTGGTGGGGACGACCTCTTTGCCATTTTGGAGAACCTTGAGGACATCTCCGACTTTCCTCCCGTTGACAAAGTTGTTGTTAGCACTAAGGAGAACGAGGAAACTTCAAGGTTCGTGTCACAAAAATCAACTTCTTCAAGTGCTCTACAAGATTCTGAAGAAACTGAGCTTGAAGCTTCACCCAAAGGCAAGAGACAGAAGCTCGCACCCAACACTTCGTCGGAGGATCCAAACCCAGATGGCCAACAAAGGATATCTCACATCACTGTTGAGCGTAACCGAAGAAAGCAAATGAACGAGCACCTATCCGTCTTAAGGTCACTTATGCCAAACTTTTATGTCAAACGCCAGGTTCTACAGTCCCTGGAAGCCAAGAAGCAAAGAAAAGTTTACAGTGAAGTGCTAAGCCCTAGGCTAGTCTCAAGTCCAAGGCCGTTAGCTCTTAGTCCTAGAAAACCCCCTGTGAGCCCTAGGCTAAGCTTGCCCATTAGTCCCAGGACTCCACAACCAGGTAGTCCTTACAAGCCCAGGTTGCAGCCAGGTTACCTTTCTCCAACCATCTCCAACTCTCTCGAGCCATCTCCTACCTCTTCTGCGGCTTCACCCTCCATTAACGATAACATCAATGAGCTTGTGGCCAATTCCAAATCTGCTATGGCCGATGTGGAGGTCAAATTTTCTGGGCCACACGTTCTCTTGAAAACAGTGTCTCCGCGTATTCCAGGGCAAGCTTTGAAGATCATATCAACACTTGAAGACCTATCGCTTGAAATCCTCCATGTCAGCATCAGCACTGCTGATGAAAACATGCTAAACTCATTCACCATTAAGGCGAAAGCAGTTGATACAATAATAAGTTACCTGTATTATTATATGAAGCAAAGTCAGGTGGTTTGGCTTGCAAGCGTGAAGTCATAG 954 0.4581 MEDIFSGILEKELGGDDLFAILENLEDISDFPPVDKVVVSTKENEETSRFVSQKSTSSSALQDSEETELEASPKGKRQKLAPNTSSEDPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPNFYVKRQVLQSLEAKKQRKVYSEVLSPRLVSSPRPLALSPRKPPVSPRLSLPISPRTPQPGSPYKPRLQPGYLSPTISNSLEPSPTSSAASPSINDNINELVANSKSAMADVEVKFSGPHVLLKTVSPRIPGQALKIISTLEDLSLEILHVSISTADENMLNSFTIKAKAVDTIISYLYYYMKQSQVVWLASVKS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0216 317 PANTHER TRANSCRIPTION FACTOR FAMA 15 289 IPR044283 GO:0003700|GO:0010052
Lele04g0216 317 MobiDBLite consensus disorder prediction 43 97 - -
Lele04g0216 317 MobiDBLite consensus disorder prediction 154 215 - -
Lele04g0216 317 MobiDBLite consensus disorder prediction 78 97 - -
Lele04g0216 317 Pfam Helix-loop-helix DNA-binding domain 95 134 IPR011598 GO:0046983
Lele04g0216 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 147 IPR011598 GO:0046983
Lele04g0216 317 Gene3D - 86 148 IPR036638 GO:0046983
Lele04g0216 317 MobiDBLite consensus disorder prediction 194 215 - -
Lele04g0216 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 127 IPR036638 GO:0046983
Lele04g0216 317 MobiDBLite consensus disorder prediction 50 66 - -
Lele04g0216 317 MobiDBLite consensus disorder prediction 159 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0216 Lele-ChrLele04 1284266 1285676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0216 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.765 7.99e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele04g0216 HLH 1.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0216 04 1284266 1285676 Lele04g0216 04 1284266 1285676 ECH
Lele01g0216 01 1230733 1232827 Lele04g0216 04 1284266 1285676 hybridization
Lele02g0214 02 1186111 1188331 Lele04g0216 04 1284266 1285676 hybridization