Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0196 ATGGAATTTGGCAGGGTCGGACCCTCCGACCCGGGTGGTTCCTCCAGGCGCTCCGATGCTCCCATCATTGCTAAACCAACTTCGTCATCAGCCACCCGCTCGCCCTCCTACAAGAAGAAGCTCATCCTCCTCTCACTTGTCGCCGTCCTGTTAATTGTCGGCTCCGCCATCTCTGCTGGCATTGTCATCGGTGGCCGTGGCCGCGGTTCCACCCAAAATGGGGTGGCCATCCGGGGGAAGCCCACGGAGGCAATTTCTAGGACCTGCAGCAAAACCCAGTACCCCAATCTGTGTGTGAACTCTTTGCTCGAGTTCCCGGGTTCGACGATGGCCTCGGATCAAGAACTTGTCCACATTTCCTTCAACATGACCCTGCAGCACCTGAGCAAAGCTCTGTACTCCTCCACCGGGATCTCCTACGTTCAGATGGATCCGCTCGAACGATCGGCGTACGAGGACTGCCTCGAGCTCCTGGAGGATTCCGTGGACGCTCTCGCACGCTCCCTCACCTCCGTCGCCCCCTCCCCATTCGACGGGAGCATCAAAGTGGTCGAGTCCACCGACGATGTCATGACGTGGCTGAGCGCCGCTCTCACGAGTCAAGACACGTGCACGGAGGGGTTCGTTGGGACGAAGGGGTCCGTGAGGGATCAGATGGCCAATAGTTTGAAGGACTTGTCGGAGCTAGTGAGCAATTGCCTGGCGATATTCGAGGGAAGCAGGAGTGTCGGCGGCGATTTCTCGGGAGTGCCCATACAGAACAGGAGGAGATTGATGGGACAGGATAATGCAGATGAGTGGGGCAAGAATAATCCGGGTAAGTTTCCGAAATGGTTGAGCAGACGAGATAGGAGATTGCTGAGCCTACCAGCATCGGAGATCCAAGCAGATATAATCGTGTCGAAGAAGGGGAATGGAACATTCAAGACGATCGCGGAGGCCATCAAGAAGGCGCCGGAGCATAGCGCTCGCCGTTTCATTATTTACGTGAGGGCAGGAAGGTATGAAGAGAAGGATTTGAAGGTGGGAAGGAAGAAAACCAATGTGATGTTGATAGGGGACGGCATGGGCAAGACAATCATCAGAGGCAAACGAAATGTTATGGATGGCCTCGCCACATTCCACACCGCTTCCTTCGCTGCAACTGGTGCCGGTTTCATCGCCCGTGACATAACATTCGAGAACTACGCCGGCCCGAGCAAGCACCAGGCGGTGGCACTCCGTGTAGGAGCCGACCACGCGGTGGTTCACCGCTGCGAGATCCTGGGATACCAGGACACTTGTTATGTCCATTCCAACCGTCAATTCTTCCGTGAATGTCGCATTTACGGAACAGTTGACTTCATTTTTGGGAACGCCGCGGTCGTTTTCCAAAACTGCAGTTTCTATGCTCGGAAGCCGATGGCCCAACAAAAAAACACCATCACAGCCCAAAACCGGAAAGACCCGAATCAGAACACGGGTATATCCATCCATAACTGCCGGATCCTTCCTGCACCGGACCTTGAGCCGGAGAAGGGAAGCATCTATACCTATCTTGGCCGTCCATGGAAATTATACTCTAGAACTGTGTATATGCTATCATTCTTCGACGATCACATACATCCACAAGGATGGCTGGAGTGGGACGCGTCATTTGCTTTGGACACATTGTACTATGGTGAGTACATGAATTATGGGCCGGGTGCGGCCATTGGAAAACGGGTCAGATGGCCAGGGTACCGGGTGATTACGTCACCCGTGGAGGCAAGAAGGTTCACGGTGGCGGAATTCATATCGGGTTCGTCGTGGCTGCCGTCAACGGGAGTGGCATTTTTGGCTGGGCTGTCTACTTGA 1836 0.5463 MEFGRVGPSDPGGSSRRSDAPIIAKPTSSSATRSPSYKKKLILLSLVAVLLIVGSAISAGIVIGGRGRGSTQNGVAIRGKPTEAISRTCSKTQYPNLCVNSLLEFPGSTMASDQELVHISFNMTLQHLSKALYSSTGISYVQMDPLERSAYEDCLELLEDSVDALARSLTSVAPSPFDGSIKVVESTDDVMTWLSAALTSQDTCTEGFVGTKGSVRDQMANSLKDLSELVSNCLAIFEGSRSVGGDFSGVPIQNRRRLMGQDNADEWGKNNPGKFPKWLSRRDRRLLSLPASEIQADIIVSKKGNGTFKTIAEAIKKAPEHSARRFIIYVRAGRYEEKDLKVGRKKTNVMLIGDGMGKTIIRGKRNVMDGLATFHTASFAATGAGFIARDITFENYAGPSKHQAVALRVGADHAVVHRCEILGYQDTCYVHSNRQFFRECRIYGTVDFIFGNAAVVFQNCSFYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLEPEKGSIYTYLGRPWKLYSRTVYMLSFFDDHIHPQGWLEWDASFALDTLYYGEYMNYGPGAAIGKRVRWPGYRVITSPVEARRFTVAEFISGSSWLPSTGVAFLAGLST 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0196 611 SMART PMEI_2 80 236 IPR006501 GO:0004857
Lele04g0196 611 Gene3D - 291 609 IPR012334 -
Lele04g0196 611 MobiDBLite consensus disorder prediction 1 33 - -
Lele04g0196 611 SUPERFAMILY Pectin lyase-like 294 608 IPR011050 -
Lele04g0196 611 CDD PMEI-like_3 89 238 - -
Lele04g0196 611 PANTHER PECTINESTERASE 51 599 - -
Lele04g0196 611 FunFam Pectinesterase 291 609 - -
Lele04g0196 611 Pfam Plant invertase/pectin methylesterase inhibitor 84 236 IPR006501 GO:0004857
Lele04g0196 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 238 IPR035513 -
Lele04g0196 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 239 IPR035513 -
Lele04g0196 611 Pfam Pectinesterase 297 594 IPR000070 GO:0030599|GO:0042545
Lele04g0196 611 ProSitePatterns Pectinesterase signature 2. 442 451 IPR033131 -
Lele04g0196 611 FunFam Pectinesterase 81 240 - -
Lele04g0196 611 TIGRFAM PME_inhib: pectinesterase inhibitor domain 80 237 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0196 Lele-ChrLele04 1091862 1094888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0196 1 610 Carbohydrate Esterase AT5G53370 63.295 0.0 790