Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0193 ATGGCTGCTGTGCTTACATCCAAGCTTTGCAAGGAAACCGCCTCTCGATTTAGATACTATACATTCAACTATACGAATGCTAGTCGCATTGTCAGTTCTCACTTTATGCACCGAACAAGGCGGGATGAGCACTTCATGATCACCACTCATCACTTCCCTTCGTTCAAGCCCGTCTCACTCGGGGGGAACTTTGAAGAAAACGGCCCTCATATTGTACAGGGTCGCAGAACGAACCAAAACCCCAGTAATATTTCTTATAGAAAAGTGAGTAAGAAATGGAGTTGCAGGTCTTATTTTACTGTTAACTGCGATGGAGAGCCCCCAGTGCTGTGGTCTGGGGATGGGGTTAACATTCGGATGGACAACTCGAACTTCAATGTGGTTCGTGGCGACGGCGGAGGTGATGGTAGTTTTGGTTCAGGAAGTGATTCTGGTTCGAATTCTAAGGATGAGTTCTCCGGTGGATCCAATTTGGGGAGTAATATTCCAACACCAAAGAAAATTTGCGAAGGACTCGATAAATTTGTAATTGGGCAGGAGAGGGCTAAGAAGGTGATTCTATCCTCCGTTCTATTTCAAGTAGTCTACGATGCAATCCGTACTGGGATTCGTTTGCCTGCAGGAGATTCAAGTACTAAAAAGGCTGATGCTGTTGATGAAGAAAGAGTTGAACTTGAGAAGAGCAATATTCTTCTAATGGGGCCAACAGGTTCAGGGAAGACATTACTAGCCAAAACTTTGGCCCGATTTGCAGGATATGTTGGGGAAGATGTCGAGTCCATTTTAAGCAAGCTCCTTATGGTTGCTGACTACAATGTGGAAGCTGCCGAACAAGGCATTGTTTACATTGATGAAGTTGACAAGATCACTAGAAAGGTTTCACTATGTCATGCTGAGAGCATTAATATCAGCAGAGATGTCTCAGGGGAAGGTGTTCAGCAGGCTTTATTGAAAATGCTTGAGGGAACAGTTGTCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGTTGACAATATTCAGGTATGTTTATGGCACAGTTATTTCATATTGAAGATTGATACAAAGAATATACTTTTCATTTGTGGAGGAGCCTTTGTTGACTTGGAGAAAACAGTCTCAGAAAGGCGCCAAGATGCTTCTATTGGATTTGGGGCACCTGTACGTGCAAATATGAGAGTAGGTGGCGTCACTGATGCTGCTGTTGCTTCATCATTACTGGAAACCGTTGAAAGTAGTGATCTTATTGCATATGGTTTAATACCAGAATTTGTTGGGAGATTTCCTGTTCTTGTCAGTTTGTCATCTTTAACAGAAAAGCAACTCATTCAGGTCCTCACAAAGCCAAAAAATGCCCTTGGGAAGCAATACAGAAAGATGTTCCAAATGAACGGTGTAAAACTGTATTTCACAGAAAATGCCCTAAGATCAATTGCCAGAAAAGCAATATCTAAAAATACTGGTGCTCGAGGTTTGCGGTCAATATTGGAGAAAGTTTTAGTAGATGCCATGTATGAGATTCCTGATACCAGAGCAGGTGATGATGTTATAGATGCTGTTGTCGTCGATGAAGAGGCTGTTGGAAGTGGGGCCAAAATCCTCTATGGTAAGGGTGCATTGGATCGATATCTTTCGGAACACAAAGATAATCCAAAGGCCATGGAGGGAGATAGTGAAGGGGAGGCAGAACTTCCTTCCATCGTTGCCAGCATCAAATTTTCCTGGAAAAAAGCCGAGAACGAAGAAAATCGAGGGAGGAGATTCAAAAAAAGAAATGCTCAGATATCTAATTTCGTGAAATTTATGATTTTGATTACTGGGTATTTCATATATCCATCACTTGTGGGAGGTCTCGGTGACTGGATGGGCTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGACGAGGACGAGATCCACCATCATAGTATACATCCTCACTCTGAGTTTTCATCCTCAAAGCCTCGCAATGGCGCCACCAATATGGGCCCCACGGCCATTGCTCCGGCAACCAGTGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGCAAATTCTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGGCAGTGTGCAGTTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCAGTTGTTGGGGACATCCCTTTCCTCGTTGCACATCTGAGGGACGATCATAAGGTGGACATGCACACAGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCCGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTGTAGCCTAGAAGTTGGGGCAAATGGCAGGAAACTGATTTGGGAGGGTACTCCAAGAAGTATCCGGGATAGCCATCGTAAAGTCAGGGACAGTCATGACGGTCTTATCATCCAACGAAATATGGCACTTTTTTTCTCTGGTGGCGACAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAACAACAGAATCCAGATTCTGGGGTGTGCATACCAAATCTTTGTAGCTGA 2835 0.4406 MAAVLTSKLCKETASRFRYYTFNYTNASRIVSSHFMHRTRRDEHFMITTHHFPSFKPVSLGGNFEENGPHIVQGRRTNQNPSNISYRKVSKKWSCRSYFTVNCDGEPPVLWSGDGVNIRMDNSNFNVVRGDGGGDGSFGSGSDSGSNSKDEFSGGSNLGSNIPTPKKICEGLDKFVIGQERAKKVILSSVLFQVVYDAIRTGIRLPAGDSSTKKADAVDEERVELEKSNILLMGPTGSGKTLLAKTLARFAGYVGEDVESILSKLLMVADYNVEAAEQGIVYIDEVDKITRKVSLCHAESINISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRVDNIQVCLWHSYFILKIDTKNILFICGGAFVDLEKTVSERRQDASIGFGAPVRANMRVGGVTDAAVASSLLETVESSDLIAYGLIPEFVGRFPVLVSLSSLTEKQLIQVLTKPKNALGKQYRKMFQMNGVKLYFTENALRSIARKAISKNTGARGLRSILEKVLVDAMYEIPDTRAGDDVIDAVVVDEEAVGSGAKILYGKGALDRYLSEHKDNPKAMEGDSEGEAELPSIVASIKFSWKKAENEENRGRRFKKRNAQISNFVKFMILITGYFIYPSLVGGLGDWMGLDNIECVSSSDGIDEDEIHHHSIHPHSEFSSSKPRNGATNMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHEAVCSFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSCSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGVCIPNLCS 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0193 944 Gene3D - 156 436 IPR027417 -
Lele04g0193 944 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 539 - -
Lele04g0193 944 MobiDBLite consensus disorder prediction 139 159 - -
Lele04g0193 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 790 IPR013083 -
Lele04g0193 944 SUPERFAMILY TRAF domain-like 735 927 - -
Lele04g0193 944 Pfam AAA domain (Cdc48 subfamily) 226 431 IPR003959 GO:0005524|GO:0016887
Lele04g0193 944 ProSiteProfiles Zinc finger RING-type profile. 682 718 IPR001841 -
Lele04g0193 944 CDD AAA 227 294 - -
Lele04g0193 944 CDD RING-HC_SIAHs 680 718 - -
Lele04g0193 944 SUPERFAMILY RING/U-box 676 722 - -
Lele04g0193 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 524 IPR027417 -
Lele04g0193 944 Gene3D - 437 542 - -
Lele04g0193 944 MobiDBLite consensus disorder prediction 130 159 - -
Lele04g0193 944 ProSiteProfiles Zinc finger SIAH-type profile. 735 795 IPR013010 GO:0008270
Lele04g0193 944 FunFam E3 ubiquitin-protein ligase SINAT3 734 790 - -
Lele04g0193 944 SMART ClpB_D2_small_2 438 535 IPR019489 -
Lele04g0193 944 Pfam C-terminal, D2-small domain, of ClpB protein 438 508 IPR019489 -
Lele04g0193 944 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 158 528 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Lele04g0193 944 CDD Sina 796 924 - -
Lele04g0193 944 FunFam E3 ubiquitin-protein ligase SINAT3 633 733 - -
Lele04g0193 944 Pfam Seven in absentia protein family 724 923 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele04g0193 944 MobiDBLite consensus disorder prediction 648 668 - -
Lele04g0193 944 FunFam E3 ubiquitin-protein ligase SINAT5-like 791 923 - -
Lele04g0193 944 SMART AAA_5 226 524 IPR003593 -
Lele04g0193 944 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 792 923 IPR008974 GO:0005515
Lele04g0193 944 MobiDBLite consensus disorder prediction 653 668 - -
Lele04g0193 944 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 80 550 - -
Lele04g0193 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 734 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0193 Lele-ChrLele04 1069240 1078544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0193 654 930 C3H Transcription Factor Family AT2G41980 76.619 1.07e-156 461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0203 03 1077376 1080006 Lele04g0193 04 1069240 1078544 ECH
Lele04g0193 04 1069240 1078544 Lele04g0193 04 1069240 1078544 ECH
Lele01g0197 01 1103760 1106395 Lele04g0193 04 1069240 1078544 hybridization
Lele02g0196 02 1063588 1066001 Lele04g0193 04 1069240 1078544 hybridization