Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0192 ATGAGGCCAATCTTTTTGCCGGAGATGGGGAAGAAAGGAGGCGGATGGTTCTCCTCAGTGAAGAAAGTTTTCAAATCGTCTTCTAGTAACAAGGACTCGTCGGCGCCGGCTAGGAAGAAGGATAATGAAAGAAGACAGCCTGAAGTGGCAGAGGTCGTATCTTTTGAACATTTTCCCGCGGAGAGTTCTCATGACGATGTCACCATCACCAATGAGAACAGCATAGCATCCACGCCTGTGGCTGAAGATAGACATCATGCCATCGCGATGGCTGCGGCCACAGCGGCTGCTGCAGAAGCAGCGGTTGCAGCGGCACAGGCGGCCGCCAGAGTCGTTCGGTTGGCAGGTTACGGGCGCCACACTAAGGAAGAAAGAGCAGCAACTCTCATTCAATCATACTACAGAGGCTACCTAGCTCGACGGGCACTGCGTGCGTTGAAGGGATTGGTGAGGCTGCAGGCACTTGTGAGGGGGCATAATGTGCGGAAGCAAGCTCAAATGACAATGCGGTGCATGCAAGCATTGGTTAGAGTACAGGCAAGAGTAAGAGCTCGCAGATTCCAGTTGAGCCACCAAGAGCAACTTCGCAAGACAGAGGATGATAGAGAATTTGAGGAGCAAGTTGCGAGGCCTATGAGCCCCATGAATAGGTGGGACAATAGGCGTCACGGCAGGCACAAAATGCAGCAAAATGATGCCAGGAAACACGACGCCCTAATAAAGAGGGAGAGACCTCTTGCTTATGCTCTCAGCTCTCGGTCAGACCCCAACGGCGACCATGTTGGAACCATGGAGTACAATAACGAGCGTGAGAAGGCCCCGTGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCACAGCCTTACAATGTCCGGAACGTGGGGCCACGGGAGACCTCTTACATGACGCTTGCCACCACAACCCCCACCACCACCGACGACATGTCTGAAAAGACGGTGGAGATGGACATGGTCGCGCCTTTAGGCTCAAGCAACGTCAGCGCTATGGACCTAATGAACCAGGAGTTTCTCTATTCAAGCCCAATGTCCAACACAAGACACCATCGACAGTTCAGTTTAAATGGGCCTAGCTATATGGCTCCGACCCAGTCTGCGAAGGCCAAGGTGCGGGGTCAGGTGCCGATCAAGCCACGTGGCTCACCTGGGCCCCAGTGGAACTCTTCCACAAAGAAAGGGCCCGGTATCGGTTCGGTCTGTGATTCCTCGAGCTCCGGAGGAGGAACGTCGAATTACCACTTCCCGAGGAGCCCCAGCCCAAAAATGAATGGGAGTCGGCCGCAGTCTAGGAGGATTGCGGGTAGCAGCCCAGATTATTCGGGCTTTGAGGACTGGGCACTTCCTCTCGGTGGCCATGGCTGGGCATGA 1386 0.5447 MRPIFLPEMGKKGGGWFSSVKKVFKSSSSNKDSSAPARKKDNERRQPEVAEVVSFEHFPAESSHDDVTITNENSIASTPVAEDRHHAIAMAAATAAAAEAAVAAAQAAARVVRLAGYGRHTKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRFQLSHQEQLRKTEDDREFEEQVARPMSPMNRWDNRRHGRHKMQQNDARKHDALIKRERPLAYALSSRSDPNGDHVGTMEYNNEREKAPWGWNWLERWMSSQPYNVRNVGPRETSYMTLATTTPTTTDDMSEKTVEMDMVAPLGSSNVSAMDLMNQEFLYSSPMSNTRHHRQFSLNGPSYMAPTQSAKAKVRGQVPIKPRGSPGPQWNSSTKKGPGIGSVCDSSSSGGGTSNYHFPRSPSPKMNGSRPQSRRIAGSSPDYSGFEDWALPLGGHGWA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0192 461 Pfam Protein of unknown function (DUF4005) 347 385 IPR025064 -
Lele04g0192 461 MobiDBLite consensus disorder prediction 388 441 - -
Lele04g0192 461 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Lele04g0192 461 MobiDBLite consensus disorder prediction 25 47 - -
Lele04g0192 461 Gene3D - 120 171 - -
Lele04g0192 461 PANTHER IQ-DOMAIN 5-RELATED 9 408 - -
Lele04g0192 461 SMART iq_5 122 144 IPR000048 GO:0005515
Lele04g0192 461 SMART iq_5 145 166 IPR000048 GO:0005515
Lele04g0192 461 MobiDBLite consensus disorder prediction 214 234 - -
Lele04g0192 461 MobiDBLite consensus disorder prediction 371 461 - -
Lele04g0192 461 Pfam IQ calmodulin-binding motif 150 165 IPR000048 GO:0005515
Lele04g0192 461 Pfam IQ calmodulin-binding motif 124 144 IPR000048 GO:0005515
Lele04g0192 461 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0192 Lele-ChrLele04 1062639 1066898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0192 9 427 IQD Protein Family AT3G49260 48.673 4.78e-92 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0192 04 1062639 1066898 Lele04g0192 04 1062639 1066898 ECH
Lele01g0195 01 1083442 1085875 Lele04g0192 04 1062639 1066898 hybridization
Lele02g0194 02 1051203 1053583 Lele04g0192 04 1062639 1066898 hybridization