Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0181 ATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAAATCCCCGGTCCTTCCTGGATGCCTAGATTTACGCCTGAAGTTTCTGCTATCATCTTCTGTTGACAAGACTGTCCGTCTATGGCAAGTGGGATATGATCATTGCATGAAAGCTTTCTCGCACAATAATTATGTGACTTGTGTACAATTCAATCCTGCGGACGATGACTATTTCATTTCTGGATCTATTGATGGGAAAGTGCGCATCTGGGCAATTCCAGATTGTCATGTTGTTGATTGGACTGATATCAGAGAAATTGTGACTGCAGTGTGTTACCGACCTGATGGGCAGGGTGGGATAATTGGCTCCATTACAGGAAATTGTCGGTTCTACGATGTCTCAGAGAATCACTTGCAGTTGGATTCACAGCTATGCTTAGTTGGTAAAAAGAAACATCCTGGCAGAGGGATAACTGGCTTTCAGTTTCATCCACAAGATCCTGGCAAGGTTTTGGTTACCAGTTCTGATTCAAAAGTCAGAATCATTGATGGGGATAATGTGGTTGGCAAATACAAAGGCATCAGCGCAGGGAGCCAACTATCTGCATCATTTACTTCAAATGGGAAACACATTTTATCAGCCTGCGAAGACTCTAATGTATATTTATGGAACGTTAGTCAGGAACAGTCTAGTCCCAAAAAAGCAAAGAAGATTAAGTCTTGTGAGCGGTTTTATTCAAATGCATCTGTTGCAGTACCATGGTGTGGTTTGAAATCTCAAAATCATGTTTATGATTATCAGTCGGATATATTGGGTCAGAGATCACCTCAAATTATACGTCTCAACCCACCTGCTTCTTTTTCTCTCAGCCAAGATTACTACTTGGGATCCTTTCCCAAGGGATCTGCAACTTGGCCTGAGGAGAAGCTTCCCGTTTCAAGTCTCAAGGCCAAAAAGTCTGCAATGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACATCCAGTTCTCATGCATGGGGTCTGGTCATCGTCACTGCAGACTGGGATGGGCGGATAAAGTCATTCCACAATTATGGTTTACCCGCACCTGTCTGA 1104 0.433 MVARLTPDQKVACSIHVGFKSPVLPGCLDLRLKFLLSSSVDKTVRLWQVGYDHCMKAFSHNNYVTCVQFNPADDDYFISGSIDGKVRIWAIPDCHVVDWTDIREIVTAVCYRPDGQGGIIGSITGNCRFYDVSENHLQLDSQLCLVGKKKHPGRGITGFQFHPQDPGKVLVTSSDSKVRIIDGDNVVGKYKGISAGSQLSASFTSNGKHILSACEDSNVYLWNVSQEQSSPKKAKKIKSCERFYSNASVAVPWCGLKSQNHVYDYQSDILGQRSPQIIRLNPPASFSLSQDYYLGSFPKGSATWPEEKLPVSSLKAKKSAMHKSEYKFLKSSCKSTSSSHAWGLVIVTADWDGRIKSFHNYGLPAPV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0181 367 PANTHER WD REPEAT DOMAIN 44 33 364 IPR040324 -
Lele04g0181 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Lele04g0181 367 SUPERFAMILY WD40 repeat-like 14 357 IPR036322 GO:0005515
Lele04g0181 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 89 IPR001680 GO:0005515
Lele04g0181 367 PRINTS G protein beta WD-40 repeat signature 77 91 IPR020472 -
Lele04g0181 367 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Lele04g0181 367 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Lele04g0181 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 232 IPR001680 GO:0005515
Lele04g0181 367 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lele04g0181 367 Gene3D - 13 263 IPR015943 GO:0005515
Lele04g0181 367 SMART WD40_4 142 182 IPR001680 GO:0005515
Lele04g0181 367 SMART WD40_4 183 223 IPR001680 GO:0005515
Lele04g0181 367 SMART WD40_4 8 48 IPR001680 GO:0005515
Lele04g0181 367 SMART WD40_4 92 131 IPR001680 GO:0005515
Lele04g0181 367 SMART WD40_4 51 90 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0181 Lele-ChrLele04 1000980 1010563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0181 35 226 U-box Gene Family AT2G33340 29.353 5.51e-06 46.2