Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0180 ATGTCGCTCCGACGAAGGACTCACGCGCTGAAACCGGCATCTAAGTCCCCTTCCGTCGGTAAATCGTCCGATTACGATGACGTGTGCTGCGAAGAATGTGGATCCGGCCACTCGCCGGCTAAGTTGATTCTTTGTGACAAATGTGATCGAGGATACCACCTCTTCTGCCTCAGACCCATACTTGTTTCTGTGCCAAAAGGGTCTTGGTTCTGCCCCTCCTGCCCTAAAAACAAGAAGCCCAAGTCTTTTCCTCTAGTTCAGACTAAAATTATTGATTTCTTTCGCATTCAACGATCGCCGCAAGCCACTCAAACATCCAGACAAGATATCCGAAAGAAACGAAAGCGGGCTACAAGCCTAGTGCTGTCGAAAAAGAAAAGAAAGCTGCTGCCATTCTGCCCGAGTGAGGATCCTTCAAGGAGATTGGAACAGATGGCATCTCTGGCAACGGCATTGATGGCAACTGATACAGAATACAGTAATGAGCTTACTTACATGCCTGGAATGGCACCGAGATCAGCTAATCGTGCGTCTCTTGAAAAGGGTGGAATGCAGGTTCTGTCCAAGGAAGATTCAGACACCTTGAACTTTTGCAAGAGTATGATGGAAAGAGGAGAATGTCCACCACTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAAGCAGATAAGTGGATAAGAGACTTAACAATAATCACAGAGTATGTTGGAGATGTTGACAATTTGAGGAATCGTGAAAATGATGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTGATGCTTCACGAACGTTAGTAGTCTGTCCGGACAAACGAAGTAACATTGCGCGGTTTGTTAACGGCATTAACAATCACACACCGGAAGGGAAGAAAAAGCAGAACTTAAAATGCGTGAGGTTCGACGTCAATGGGGAGTGTCGGGTTCTACTGATTGCAAACAGAGACATATCAAAGGGGGAGAGATTGTACTATGACTACAACGGAAGCGAGCATGAATATCCAACGGAACACTTCGTGTAA 1029 0.4606 MSLRRRTHALKPASKSPSVGKSSDYDDVCCEECGSGHSPAKLILCDKCDRGYHLFCLRPILVSVPKGSWFCPSCPKNKKPKSFPLVQTKIIDFFRIQRSPQATQTSRQDIRKKRKRATSLVLSKKKRKLLPFCPSEDPSRRLEQMASLATALMATDTEYSNELTYMPGMAPRSANRASLEKGGMQVLSKEDSDTLNFCKSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIITEYVGDVDNLRNRENDDGDSMMTLLSASDASRTLVVCPDKRSNIARFVNGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0180 342 Gene3D SET domain 114 342 IPR046341 -
Lele04g0180 342 CDD SET_ATXR5_6-like 205 342 - -
Lele04g0180 342 SUPERFAMILY FYVE/PHD zinc finger 22 81 IPR011011 -
Lele04g0180 342 FunFam Histone-lysine N-methyltransferase ATXR5 114 342 - -
Lele04g0180 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Lele04g0180 342 MobiDBLite consensus disorder prediction 1 24 - -
Lele04g0180 342 Pfam PHD-finger 30 75 IPR019787 -
Lele04g0180 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 91 IPR013083 -
Lele04g0180 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Lele04g0180 342 SMART PHD_3 29 75 IPR001965 -
Lele04g0180 342 SUPERFAMILY SET domain 158 332 IPR046341 -
Lele04g0180 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Lele04g0180 342 CDD PHD_RSF1 30 74 - -
Lele04g0180 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 104 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0180 Lele-ChrLele04 997934 1000083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0180 25 91 C2H2 Transcription Factor Family AT3G01460 37.313 1.35e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele04g0180 PHD 9.7e-10 CL0390