Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0173 ATGGCGGGTTCGTCCGAGACGAAGTTCGTCCAAGATTTGTTATTGTACGCGGCAAGTGCGGCGCTCAGTTGCTTGGTTTTGTTCGCTGGGCTTCGACACCTCGACCCTAATCGTGAGACATCAAAAAAAGCTCTTCAACACAAGAAAGATTTAGCTAAGCGTCTCGGTCGTCCTCTCATTCAAACAAACGCTTATGAGGATGTCATAGCCTGTGATGTTATTAATCCCGACCACATTGATGTGAAGTTTGACTCCATTGGGGGACTGCAAACGATTAAGAAAGCTTTGTTTGAGCTTGTTATACTGCCGCTTAAACGACCTGAACTATTCTGTCATGGCAAACTTCTTGGCCCACAAAAGGGGGTCCTCTTGTATGGACCCCCCGGTACCGGGAAAACCATGCTTGCCAAAGCTATTGCAAAGGAGTCTGGATCAGTCTTCATTAATGTAAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCCCAGAAACTTGTGGCTGCTGTATTTAGCCTGGCTTATAAGCTCCAACCTTCCATCATATTCGTTGATGAAGTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCAATGTTAAACATGAAAACTGAGTTCATGACTTTATGGGATGGATTTACCACTGATCAGAATGCTCGAATTATGGTCCTTGCAGCAACCAATCGTCCCTCAGAACTTGATGAGGCCATATTAAGGCGGTTTCCTCAAGCCTTTGAAATTGGACTTCCAGACCAAAGGGAGAGGGCTGAGATATTTAAGGTTATCTTAAAGGGTGAGAGAGTTGAAGACAACATTGACTTTGATCATATAGCTGCCTTGTGTGAGAGATATACTGGTTCAGATCTGTTTGACCTCTGCAAGAAGGCTGCCTATTTTCCCATTAGGGAACTGCTGGATAAAGAAAGGCAAGGGAGAAATGCTCCTGAACCAAGGTATTTGTCGCAGTCAGATTTGGAGAAGGCTCTCACCACTTCACGGAAAACAAAGGTTGCTGCTGGTGAATACAGTGGATTAAATGTACAGTCATCAAGAAGGCCAGGACACAGGGAGTCAGGTGATTATCAGTTTCAAGCTGCAATCAACGAACTCTCTAAGCTTGTGGTTTCTCAAATTATTAACCTCCAATCAGATGCGCAGGATCCGTAA 1176 0.4473 MAGSSETKFVQDLLLYAASAALSCLVLFAGLRHLDPNRETSKKALQHKKDLAKRLGRPLIQTNAYEDVIACDVINPDHIDVKFDSIGGLQTIKKALFELVILPLKRPELFCHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGSVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPSIIFVDEVDSFLGQRRTTDHEAMLNMKTEFMTLWDGFTTDQNARIMVLAATNRPSELDEAILRRFPQAFEIGLPDQRERAEIFKVILKGERVEDNIDFDHIAALCERYTGSDLFDLCKKAAYFPIRELLDKERQGRNAPEPRYLSQSDLEKALTTSRKTKVAAGEYSGLNVQSSRRPGHRESGDYQFQAAINELSKLVVSQIINLQSDAQDP 391
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0173 391 Pfam AAA+ lid domain 274 309 IPR041569 -
Lele04g0173 391 SMART AAA_5 118 254 IPR003593 -
Lele04g0173 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Lele04g0173 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Lele04g0173 391 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Lele04g0173 391 Gene3D - 80 337 IPR027417 -
Lele04g0173 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 331 IPR027417 -
Lele04g0173 391 CDD AAA 116 252 - -
Lele04g0173 391 Gene3D - 253 333 - -
Lele04g0173 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 32 343 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele04g0173 Lele-ChrLele04 958322 960717 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0173 37 318 Calmodulin-binding Proteins AT3G56690 31.469 2.49e-37 142