Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0168 ATGCAGGTCTTCGTCAAAACCTTAACAGGGAAGACCATCACCCTTGAGGTCGAGTCCAGCGATACCATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCTCCGGACCAGCAAAGATTGATTTTTGCCGGGAAGCAACTGGAGGATGGCCGTACTCTTGCCGATTATAACATCCAGAAAGAGTCGACATTGCATCTTGTTTTGAGGCTTCGTGGTGGTATTATCGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATATGCCGCAAGTGTTATGCTCGTTTGCACCCCCGTGCTGTCAACTGCAGGAAGAAGAAATGTGGACACAGCAACCAGGTATCCCATTTTGACTTATGGTTAGAAGTAATCAGTATTGATAATCCCAAGTTTCTGTACTTGCCTTCATTAATCATTATTCCAAAAAAACAAAAGTCAACGTTGATGTTAATCCAGCGAGAGTTACAGGATGAGATGCCTTTTGATAGAATGGAAATGAGCCAGTTGATGAAACTAAAAGAAATTAACAAGTTCTGTGCTCTACTAAGTCAAGTAATATGTCACTAG 588 0.4201 MQVFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVSHFDLWLEVISIDNPKFLYLPSLIIIPKKQKSTLMLIQRELQDEMPFDRMEMSQLMKLKEINKFCALLSQVICH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0168 195 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lele04g0168 195 Gene3D - 1 79 - -
Lele04g0168 195 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lele04g0168 195 Gene3D - 80 123 IPR038587 -
Lele04g0168 195 FunFam ubiquitin-60S ribosomal protein L40 79 124 - -
Lele04g0168 195 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Lele04g0168 195 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lele04g0168 195 PANTHER UBIQUITIN 1 91 - -
Lele04g0168 195 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele04g0168 195 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele04g0168 195 CDD Ubl_ubiquitin 1 76 - -
Lele04g0168 195 SUPERFAMILY Zn-binding ribosomal proteins 76 119 IPR011332 GO:0006412
Lele04g0168 195 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lele04g0168 195 Pfam Ribosomal L40e family 78 121 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele04g0168 195 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lele04g0168 195 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lele04g0168 195 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0168 Lele-ChrLele04 934540 936646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0168 1 121 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.521 2.68e-86 248