Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0167 ATGGCAACATCTCCCTCCAGCATCCAACGCGTCGGAAATCGGCTTGATCACCAAAATGCCCTCCCCCGCCGTCGCCGAGCAGAGCGCGCCCAAGAACACCATCAGCGTCGCCACGAAGTACGAATCCTCTTCCGGGTTCCACAGCGCCGTCAGCCCGAGAAACACAATCTGCAGCGTCAGCGACCCCAGAACGGCGAACGCCAGCCCATAAATCCGAATCCTCAGGCCCTTATTGATCACCAGCGAGAGCACCTTCCAGGTGGAGCACAGGAACCACAGCCCGTACGAGACCCCGAAAGCCGCAAACACGATGCTATTCAACAGCGGGTAAGCACAGAGGACCGTCTCGGTGCCGGAATCGTCGATGGTGCGAACGACGGAAGTCTGATGGAAAGAGAGGGGCAGGCGGAGCTCGTAGGGCTTGAGGAGGATGGAGAGGAGGTGGAGGAGGGCGATGGGAAGGCAGGTGAGGAGGACGAAGGAGATGGCCCAGGTATCTTTAGGGGTCTTCTTGCGGATGGAGGCGTTGAGGAGGAAGAGGAGGGTGACGAGGAAGGCGGGCTGGAAGAGGCCGAGGGAGAGGACGATGTGGAGGCGACAGAGGTTGGCCTGCTGGGAGACGGGAAGAGGGGGGAAGAAGGAGAAGAGATGCTGGTGAAGGAGGAGCTGGGAGAAGGCCCAGAGGAAGATGAAGAGGACGAGGAGGAAACGGACGGTCCAGAGGGAGTTGAAATCCTGGAGGTGGAGGAGGGATCGGGATTTGAAACGGAGGTGGAAGATGAAGCACAGGGAGAGGACGGAGAGGAGGATGAGGGCGGAGAGGAGGATGAGGATGGAGAGGTCGAGGAGTGCACTCGTTTGGCTTCATGCCTACCCAGTAAAGTTGCCATACTAATTGCCCTTGACATGAAATCACTCCACTTTTCAACTCAGGAAACTGCTACCACTGGTTTACTAATGATGGTGGGTGGTGAGTATATTCGTGCATCAAAGGAACGTAATATTGGAGGCTTCACCGGCTCAAAGCCACCTGAGAATTCGAGAAAGAAGAGCAGCATAGAAAACAAGAGGAGGTTTAGCGATGAACAAATTCGATCGCTTGAATGCATATTTGAGTCAGAATCAAGGCTTGAGCCGAGAAAGAAGATGCAACTAGCAAGAGATCTTGGGTTGCAGCCGCGCCAGGTTGCCATATGGTTCCAGAACAGAAGAGCCAGATGGAAATCAAAACACATGGAGCAAGAATACAGGAAACTGAGAGACGAGTATGACAATTTAGCATCTCTTTTTGAGTCCATAAAGAAAGAGAAGGAATCCTTGCAAGCTGAGGTACAAAAGCTGAGAGATTTAGTGGAGACGTGTGATGATGGTAGTAAAAGGGAAAACAGGGTTGGGATGGACAATAGCACAGAGGATGGTGTTTCAGGCAGCGGACAAAACAAAATGAGCGCTGAAGCAAAGCCAAATTTCTCAAATGAAGGTTCAGAGAATGCGAAGAATGATGATATAAGAGAATTGGGATCGATTGAAAAATTGTACAGTGTTGATCCAAGTGGTCTCTTGGATCAGTCTTGCAGCAGTTCGCAGTGGTTAGATTTCTGGAATTGA 1608 0.5211 MATSPSSIQRVGNRLDHQNALPRRRRAERAQEHHQRRHEVRILFRVPQRRQPEKHNLQRQRPQNGERQPINPNPQALIDHQREHLPGGAQEPQPVRDPESRKHDAIQQRVSTEDRLGAGIVDGANDGSLMEREGQAELVGLEEDGEEVEEGDGKAGEEDEGDGPGIFRGLLADGGVEEEEEGDEEGGLEEAEGEDDVEATEVGLLGDGKRGEEGEEMLVKEELGEGPEEDEEDEEETDGPEGVEILEVEEGSGFETEVEDEAQGEDGEEDEGGEEDEDGEVEECTRLASCLPSKVAILIALDMKSLHFSTQETATTGLLMMVGGEYIRASKERNIGGFTGSKPPENSRKKSSIENKRRFSDEQIRSLECIFESESRLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKHMEQEYRKLRDEYDNLASLFESIKKEKESLQAEVQKLRDLVETCDDGSKRENRVGMDNSTEDGVSGSGQNKMSAEAKPNFSNEGSENAKNDDIRELGSIEKLYSVDPSGLLDQSCSSSQWLDFWN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0167 535 MobiDBLite consensus disorder prediction 17 61 - -
Lele04g0167 535 Coils Coil 402 453 - -
Lele04g0167 535 MobiDBLite consensus disorder prediction 95 110 - -
Lele04g0167 535 MobiDBLite consensus disorder prediction 1 283 - -
Lele04g0167 535 SUPERFAMILY Homeodomain-like 344 410 IPR009057 -
Lele04g0167 535 ProSitePatterns 'Homeobox' domain signature. 385 408 IPR017970 GO:0000981|GO:0006355
Lele04g0167 535 CDD homeodomain 356 411 IPR001356 GO:0003677
Lele04g0167 535 MobiDBLite consensus disorder prediction 333 355 - -
Lele04g0167 535 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 346 486 IPR045224 GO:0003700
Lele04g0167 535 MobiDBLite consensus disorder prediction 222 282 - -
Lele04g0167 535 MobiDBLite consensus disorder prediction 140 157 - -
Lele04g0167 535 ProSiteProfiles 'Homeobox' domain profile. 350 410 IPR001356 GO:0003677
Lele04g0167 535 MobiDBLite consensus disorder prediction 468 496 - -
Lele04g0167 535 FunFam Homeobox-leucine zipper protein ATHB-7 338 410 - -
Lele04g0167 535 PRINTS Lambda-repressor HTH signature 390 406 IPR000047 GO:0003677
Lele04g0167 535 PRINTS Lambda-repressor HTH signature 381 390 IPR000047 GO:0003677
Lele04g0167 535 Pfam Homeodomain 356 408 IPR001356 GO:0003677
Lele04g0167 535 MobiDBLite consensus disorder prediction 176 201 - -
Lele04g0167 535 Gene3D - 354 416 - -
Lele04g0167 535 SMART HOX_1 353 414 IPR001356 GO:0003677
Lele04g0167 535 MobiDBLite consensus disorder prediction 457 501 - -
Lele04g0167 535 MobiDBLite consensus disorder prediction 202 221 - -
Lele04g0167 535 Pfam Homeobox associated leucine zipper 410 451 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0167 Lele-ChrLele04 927927 934118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0167 355 443 Homeobox Transcription Factor Family AT2G46680 76.404 2.28e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele04g0167 Homeodomain 2.1e-16 CL0123