Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0157 ATGTTACAGCAGAGCCAAAACAAGATGGTGAGCCCAAACAATGCCAAGCAAGTTGGCGACACAACCTATACCAAGATCTTCGTTGGAGGACTCGCCTGGGAGACCAAAAGGGACACTCTGAAACACTATTTTGAGCAGTTCGGAGAGATCTTAGAGGCTGCTGTTATACACGACAGAAACAGTGGAAGATCAAATGGCTACGGCTTTGTGACATTCAAGAGCCCAGATTCTGCAATAAGAGCCTGCCAGAATCCCTATCCTATGATTGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTAGGTGCACAGAGATTCAATCCATATACAACAGTCGTAGGAAAGGAGAAATTTTGCGCAACTTCTTGGCCTATGGTTTTAGTTCCAATTCAAGGAATCCCCTCTTATTACAATCAACACATACCCCAGTATGCGTTCCCTTATCCATCATTCAGGTATCATGGATATCCGCCCACACAGGAAATTTACGCAATGAACTATTATAATGTCTATGGAGGGCAGCAAATTCCCATCCGTTGGCCTTCAGTATATTACCGGCCGTTTAATGGGGCTAGACAGATGGTTCCACCAGCATATTTGAAAAAGGCACAATACCCTGACCCTTCATCTCAGGAATCGTTCACAGTCGTCGGCTTATCACAACCTATCTCAGCTTCTCCTTCAATACCCACCACAGGGGATGCTGCTTCTGCAGCAGGAATGGCCGGAACCTCCCCTGAGCAGAAATCTTGA 753 0.4608 MLQQSQNKMVSPNNAKQVGDTTYTKIFVGGLAWETKRDTLKHYFEQFGEILEAAVIHDRNSGRSNGYGFVTFKSPDSAIRACQNPYPMIDGRRANCNLAALGAQRFNPYTTVVGKEKFCATSWPMVLVPIQGIPSYYNQHIPQYAFPYPSFRYHGYPPTQEIYAMNYYNVYGGQQIPIRWPSVYYRPFNGARQMVPPAYLKKAQYPDPSSQESFTVVGLSQPISASPSIPTTGDAASAAGMAGTSPEQKS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0157 250 SMART rrm1_1 25 97 IPR000504 GO:0003723
Lele04g0157 250 Gene3D - 1 109 IPR012677 -
Lele04g0157 250 CDD RRM_RBM24_RBM38_like 24 99 - -
Lele04g0157 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Lele04g0157 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lele04g0157 250 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Lele04g0157 250 MobiDBLite consensus disorder prediction 225 250 - -
Lele04g0157 250 PANTHER BOULE-RELATED 10 221 IPR037366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0157 Lele-ChrLele04 887491 888881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0157 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 2.42e-15 73.2