Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0156 ATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGCTCATCCAGTCAAAATTTAGATAACAGTTTAGTATCATCGGACTCAACTGTGACAAATGAGCTGGAGAAATCCAAACCCAGAACTGGGGCAACTGGAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATGAGAGTCTGAATGATGTGTTCGGCCATCAGGATAGAGCTCCGTCGGTCCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGCGAAATGAGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATTAAGCAAATATCTCACGGTGTAGGGAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCAAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTACCAATAATCACGTATTATTAGGTGGTGCTGGGTTTAGTTACCCTAACAACTTTCCACCCCACACTAATTACGGCAATGCAAATGGACATACTAACCCAAGGAGGAAGAATGGATATAATCAAGGCAAGCGAAGAGCTAATAATAAAATGGAAGTGGAGAATAGAGAAGAGATGATTAAGAAGACTGTATATGTTTCTGACATTGATCAACAGGTCACCGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGGCAGGTTGTTGATTGCCGAGTATGCGGGGATCCTAATTCCATACTTCGTTTTGCCTTCATCGAGTTTACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACTATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACGCAGGCAGATGTTAAGCTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATTGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTTGCTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGGTCTCGTGCGCCACGTGGATCAATGCACTGA 1194 0.4523 MAVAENAGAIIGSSSQNLDNSLVSSDSTVTNELEKSKPRTGATGNGLETDVQPVNGDESLNDVFGHQDRAPSVPNGNYKSQITQMRNEFEANGVQNQQMVLNNSGYGIKQISHGVGNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLTNNHVLLGGAGFSYPNNFPPHTNYGNANGHTNPRRKNGYNQGKRRANNKMEVENREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGLLPIRVSPSKTPVRSRAPRGSMH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0156 397 MobiDBLite consensus disorder prediction 173 187 - -
Lele04g0156 397 MobiDBLite consensus disorder prediction 14 56 - -
Lele04g0156 397 MobiDBLite consensus disorder prediction 173 197 - -
Lele04g0156 397 FunFam Polyadenylate-binding protein-interacting protein 10 303 381 - -
Lele04g0156 397 SUPERFAMILY RNA-binding domain, RBD 189 288 IPR035979 GO:0003676
Lele04g0156 397 Gene3D - 295 391 IPR012677 -
Lele04g0156 397 Gene3D - 173 289 IPR012677 -
Lele04g0156 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Lele04g0156 397 CDD RRM1_CID8_like 210 289 IPR034823 -
Lele04g0156 397 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Lele04g0156 397 MobiDBLite consensus disorder prediction 14 77 - -
Lele04g0156 397 SMART rrm1_1 310 381 IPR000504 GO:0003723
Lele04g0156 397 SMART rrm1_1 213 283 IPR000504 GO:0003723
Lele04g0156 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Lele04g0156 397 FunFam Polyadenylate-binding protein-interacting protein 11 176 289 - -
Lele04g0156 397 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 134 390 - -
Lele04g0156 397 SUPERFAMILY RNA-binding domain, RBD 298 392 IPR035979 GO:0003676
Lele04g0156 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 373 IPR000504 GO:0003723
Lele04g0156 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Lele04g0156 397 CDD RRM2_CID8_like 305 386 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0156 Lele-ChrLele04 882448 886146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0156 214 373 Eukaryotic Initiation Factors Gene Family AT1G34140 25.610 7.11e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0161 03 860787 866119 Lele04g0156 04 882448 886146 ECH
Lele04g0156 04 882448 886146 Lele04g0156 04 882448 886146 ECH
Lele01g0153 01 885968 889928 Lele04g0156 04 882448 886146 hybridization
Lele02g0159 02 879327 883381 Lele04g0156 04 882448 886146 hybridization