Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0136 ATGGGTCGGCTTGTATTCTGGCTCTACTTCTTCCCCAACATTCCATTCATGCTTCATATGAACACATTTGATTCCTCCACCAAATTCAACTCAGCAGAAGAGGGAGAAGGCTGGGAAGAAACAGCGCCGAAGATGAAAACAATCTTGTCTTCTGAAACAATGGACATCCCCGATGGGGTGTCCATCAAAGTTAAAGCAAAGATCATTGAGGTTGAGGGACCTCGCGGCAAGCTTGTTCGTGATTTTAAGCACTTGAATATCGATTTTCAACTTATCACCGACGAGGAAGGCAAGAGAAAGCTTAAGGTTGATGCCTGGTTTGGATCCAGGAAAACCTCTGCCTCCATTCGCACGGCACTCAGTCATGTAGAAAATCTCATTACCGGCGTCACAAAGGGTTACCGCTATAAGATGAGGTTTGTCTATGCGCATTTTCCTATTAACGCCAGCATTACCAACAGCAACAAGTCCATTGAGATCCGAAACTTCCTTGGCGAGAAAAAGGTGAGGAAAGTGGATATGCTTGAGGGAGTTTCAATTCTACGATCTGAAAAGGTTAAGGATGAGTTGGTATTGGATGGAAATGATATTGAGCTGGTTTCTCGTTCTGCCGCCCTCATCAATCAGAAATGCCATGTCAAGAATAAAGATATTCGGAAGTTTCTTGATGGCATTTACGTTAGCGAGAAGGGAACAATCCATGAAGAGTAG 711 0.4402 MGRLVFWLYFFPNIPFMLHMNTFDSSTKFNSAEEGEGWEETAPKMKTILSSETMDIPDGVSIKVKAKIIEVEGPRGKLVRDFKHLNIDFQLITDEEGKRKLKVDAWFGSRKTSASIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNFLGEKKVRKVDMLEGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIHEE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0136 236 ProSitePatterns Ribosomal protein L6 signature 2. 209 230 IPR002359 GO:0003735|GO:0005840|GO:0006412
Lele04g0136 236 Gene3D - 134 236 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 FunFam 60S ribosomal protein L9 45 133 - -
Lele04g0136 236 SUPERFAMILY Ribosomal protein L6 134 230 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 Gene3D - 45 133 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 SUPERFAMILY Ribosomal protein L6 45 133 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 45 234 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 FunFam 60S ribosomal protein L9 134 236 - -
Lele04g0136 236 Pfam Ribosomal protein L6 56 133 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele04g0136 236 Pfam Ribosomal protein L6 145 224 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0136 Lele-ChrLele04 782376 784210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0136 45 236 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.456 2.47e-117 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0136 04 782376 784210 Lele26g1048 26 6780426 6784664 CCT
Lele04g0136 04 782376 784210 Lele28g1039 28 6734758 6741752 CCT
Lele04g0136 04 782376 784210 Lele04g0136 04 782376 784210 ECH
Lele01g0138 01 812740 813890 Lele04g0136 04 782376 784210 hybridization
Lele02g0138 02 787553 788681 Lele04g0136 04 782376 784210 hybridization