Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0125 ATGATAAATCCTCCTCTGTCACCCACCATATGTCACTCTATGGACCAGAAGCATTCAAATGAGAGCCTTCAATGGGCTATTATCGAGCAAGAAGAAGAACAAGTTCAGAAGGAGGTTGCCTTGGAAGAAAGGCATGCCCGGAAGCAACTTCAGGACAACGTTGTTTCCACTGTGACACTATCACCACCACCACCTTCTTCTTCTTCTCCTACTGCCAATGGAGGTACTGGGCATGCTAATAACGTTTCCTCACTCGATTCTGATCCAGAGGAACTTCTTCTTCAGAAAGACGAACAGGTTGCGGAGATGGGCGAGATTACGGGAGATGATAACAATCATTGTCATGAGGAAAAAGCTGATAACGCAGCAGTTGGACTTGGGCTTGTAGCAGAAGTTTCAGCAGCAGCATCTAATGGAGAGGCTAGAATTATTAATAATACTGCTGCATCCCAGAATGAGAATAGCGTTTACTTTGACAAGCAAGACTGAAAATGGAAATGTCACCACTGCAGTTGGACCAAGCAATTTGACAGTCCATGGACTATGCCCATTTGGGATCTTAAGCAAAACTCTGACTTGCTGATGAATATCAAAACCATGATCCAACATGAACCGTGTTTTGTTTGTGAAACTAAAGGAAATTGTTTCAATATGTTCTGGAAATCCAGTGGTGCTCGTGAACATGAAACTTCACAAATAACTTCAACTATACATGCATCCAACATGAAGAGTTCAAATACAGCCATATCACAGATGCAAAACTCTTCAAGTGTTGCGGGTTCCAATGAAACTGATAGCCCTGTTACTGGTACAAGTACTATGGATAATGGAAAAGCTGTGCCTGAAGTTAAGCTTGGGCATGGAGAACTGAAAGGAAATCTGGTGACCTATGTGGGAGAGGAAAAGAATGGTTCAGCAGATATAAAGACGACAGCAGATCACTCTGAAGCAAATATTGTTGCAAATTCGCCCTCAAAGAACTTTTCCTACAATATAGTACCCAACCAAGAAAGGGATCTTTTAGCTACTGCAATTATCAGCGAAGCACATAAAAATCCTGCAGAACCTGCAAAAGATGCCACTCTGAAACCTGCACAGGTTGCAAATAATTCAGCTACTGGCACGCAAAGTTCTGGAGTAAATGCTAAAATTTCGTCTGGGGAAGACTTTAGACTGAAAGATAAAGTGGAAAATAATTCTGAAGGCGAAACAAAACCTGCAGTCAGTGGTGACAATACAGGGGGTGATATGATAGTTGATGTTGAGGAGGACAAAATTGAATCAGGTGCCTCTCAGATAGGAGCTACTGATCCAATTAATGGTGCTATTTTGAGAGACACAGCTACTCAAGTTTATGTTGGTGAACAATCAAGAGCTGAAATTGGTGAAACTCGTGGATGGGAGATACTTAAAAGTATTGTCTATGGAGGTTTAATCGAATCAATCACGAGTCTGGGAATTGTGTCATCTGCAGTTGGTTCTGGTGCTGCCCCATCAGTAGCAGCAACTTCTCTTCTAGGCATCATCCTCCTTGCTATTGGGAAGGTTTACACCAAAAGACCACCCAAATCCTATTCCAAGACTGTATTCTACTACGTTACTATGTCACTTGCTGCCTCAGGAGTGTCTTATATAGTTGGTGGCCTAAGCAGGCACTTCCTAGAGAAGTTGAGTAACTTAGTCTGTCGAGTTGTGGCCTTGGAGGAGATGGAGACTCTGAAAGCTGCAATCCCGGAGAGCCTGAAGCGAATGATTGGAGAGAGCACTGCAGATGATCTTCCGACCACATGTTCTTCTCTTCACCATTTCTTACTTCATTTTGAGCCATTTCACCAAATGGTGAGTGACTTAGCAGACCCAAAAAATGCTTTATGTGGCAAGAGTGAGGCCGCCGCTTTGGAGTCCAAGCAGCTTGGCAACCATTACTTCTTGAGAGGAGATTATATGAAGTCTTTGAGCTGCTATACGAAGAGTAGTAGGATTGGACTTGGACGAGTGGCATTTGCGATTGGAATTGAAAGGCTATGGGACTGGAGGCTTCTGATGTTCATCTATCTACTCTCATTAGTTGTGATTAAAGGAGGAAAGGGTCACAAGGCATTGCGTATGGCTCCTTTGGAGGCTTTTGACCTGGAGAAGAATCTGGTTGCGATATTATATATTAATCGAGCTACTGTATTGCATAAATTGAATCTTTTAATTGAGTGTTTACGAGACTGCGCTCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCGAATGTTTCATTGGGAAATTATAAAGATGCAATCTGTGATCTAAATGTGGCTAAGAGCATGGAATCATCATTTAGTGGGAAGAAACAAATAGAAGGTGAACTTAAAAATATATTACCCCAATGCGAGGGGACAAGTTCAGTGGTTCAGAATGAGAAGAATGGCTTGGATACAATAATATTAAAGCAATGCCGAGAAACACATTGCCATTACTGCTTGAATGACCTGCCTACTGATGCAGTTCCTTGTAGATCTTGTTCAATACCACTATATTGCTCCCAGCAATGCCAGATACGGGCTGGTGGACAAATGTTCGAGATTAATCCTGAAGACCATAGCATTCTTAAAAGTCTGCCCAGTGATCTTTGGGCATATGCTACAGGAATTATATTAGGCAATGATTCTAAACATGAGTTTGAGGATATTCCTGAACATAAACATGAATGCCGAGGTGTACATTGGTCTACAGTATTTGAACTTTTCCATTGTTATGCACAACTGCCTTCTGATAGCAAATTGGATTTACATATATATGCCATTGTATTACTATATTGTCTGCTACACTCTTGTGGTGCTAGGTTTTCCATGGATGGGGTCACTATGTCGCAGGTTGTCATAATTTTTTCTCAAATCAAAGTGAATTGCATGACTATTGTTCGTATAAGATCTACAGATGCTCATGGACTACAAGATCAGTTTAGAGAATCTCTAGCTAGTGGACATTTAACGAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTACAAAGATGGCAGCTTGTTCAACCATTCTTGCCAACCAAACGTTCATGCTTATTTCCTTTCACGTACTCTGTGTATACGAACAACAGAAGTTGTAGCAGCTGGGGGTCAGCTGGAATTATCCTATGGTCCACAGGTTGGGTTATGGGATAGTAAAGATCGCCAAGCCTTTCTGAAAGATGAGTACTCATTTCAATGTCATTGTAATGCTTGTTCAGAATTCAATCTATCTGACATTGTCCTCAGTACTTTTCACTGTGTCAATCCAAATTGTTCTGGTGCTGTCTTGGACAGCAGAGTAGTTAACTGGGAAAGGCAGAAAATTAAGCACTTCCCTGGTGCTCACCAAGTTGACAAGAATGTTGACATTCATAAAATCTGTCTTCATCTATTCAACCAAAATGATGGCTACGCTCATATTCAGCCTGGGTACTGTTTGAGATGTGGCTCTTACCGTGATGTAGAGTCTTTATGCACTGCAGTTGATAAAGCTTGGATATGCATCAAAAGATTGCAGGATGCAGTGATATCAAAAGAAATTTTGAGTACTACTATTTTAGATGCATTAAAATCTCTTCATCTGCTGAAGTCATATTTGCATTCCTACAACAAGCATATTGCAGAGATACTAGAAAAGCTATATGATCCGGATGATATTGTCATTGCTTTTGAGCTCGTGAAGCTTTGTTCCATTCAAATTTCCATGGGGGATAAAACTGCGCTGGAAAGCATAAATCGAATATGTGATATCTTCTCACGTTATTATGGACTTCACGCACACTCGAATTTGAATTTCGTTTTGTGTGCAGTGACTTCATCGGTGAAAGAATTCAACCGTGAAAACTTCAATGACCTGTTCGTTGCTTCCTATGCTTGGATTGATATTGGAAACAACCAAAGCTGA 3945 0.4122 MINPPLSPTICHSMDQKHSNESLQWAIIEQEEEQVQKEVALEERHARKQLQDNVVSTVTLSPPPPSSSSPTANGGTGHANNVSSLDSDPEELLLQKDEQVAEMGEITGDDNNHCHEEKADNAAVGLGLVAEVSAAASNGEARIINNTAASQNENSVYFDKQDXKWKCHHCSWTKQFDSPWTMPIWDLKQNSDLLMNIKTMIQHEPCFVCETKGNCFNMFWKSSGAREHETSQITSTIHASNMKSSNTAISQMQNSSSVAGSNETDSPVTGTSTMDNGKAVPEVKLGHGELKGNLVTYVGEEKNGSADIKTTADHSEANIVANSPSKNFSYNIVPNQERDLLATAIISEAHKNPAEPAKDATLKPAQVANNSATGTQSSGVNAKISSGEDFRLKDKVENNSEGETKPAVSGDNTGGDMIVDVEEDKIESGASQIGATDPINGAILRDTATQVYVGEQSRAEIGETRGWEILKSIVYGGLIESITSLGIVSSAVGSGAAPSVAATSLLGIILLAIGKVYTKRPPKSYSKTVFYYVTMSLAASGVSYIVGGLSRHFLEKLSNLVCRVVALEEMETLKAAIPESLKRMIGESTADDLPTTCSSLHHFLLHFEPFHQMVSDLADPKNALCGKSEAAALESKQLGNHYFLRGDYMKSLSCYTKSSRIGLGRVAFAIGIERLWDWRLLMFIYLLSLVVIKGGKGHKALRMAPLEAFDLEKNLVAILYINRATVLHKLNLLIECLRDCARALQICPSYAKAWYRRGKANVSLGNYKDAICDLNVAKSMESSFSGKKQIEGELKNILPQCEGTSSVVQNEKNGLDTIILKQCRETHCHYCLNDLPTDAVPCRSCSIPLYCSQQCQIRAGGQMFEINPEDHSILKSLPSDLWAYATGIILGNDSKHEFEDIPEHKHECRGVHWSTVFELFHCYAQLPSDSKLDLHIYAIVLLYCLLHSCGARFSMDGVTMSQVVIIFSQIKVNCMTIVRIRSTDAHGLQDQFRESLASGHLTSNVEQVRVGKAIYKDGSLFNHSCQPNVHAYFLSRTLCIRTTEVVAAGGQLELSYGPQVGLWDSKDRQAFLKDEYSFQCHCNACSEFNLSDIVLSTFHCVNPNCSGAVLDSRVVNWERQKIKHFPGAHQVDKNVDIHKICLHLFNQNDGYAHIQPGYCLRCGSYRDVESLCTAVDKAWICIKRLQDAVISKEILSTTILDALKSLHLLKSYLHSYNKHIAEILEKLYDPDDIVIAFELVKLCSIQISMGDKTALESINRICDIFSRYYGLHAHSNLNFVLCAVTSSVKEFNRENFNDLFVASYAWIDIGNNQS 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0125 1314 MobiDBLite consensus disorder prediction 242 276 - -
Lele04g0125 1314 MobiDBLite consensus disorder prediction 370 384 - -
Lele04g0125 1314 MobiDBLite consensus disorder prediction 370 416 - -
Lele04g0125 1314 MobiDBLite consensus disorder prediction 242 279 - -
Lele04g0125 1314 MobiDBLite consensus disorder prediction 387 401 - -
Lele04g0125 1314 Gene3D SET domain 957 1056 IPR046341 -
Lele04g0125 1314 MobiDBLite consensus disorder prediction 38 101 - -
Lele04g0125 1314 SMART tpr_5 717 750 IPR019734 GO:0005515
Lele04g0125 1314 SMART tpr_5 632 665 IPR019734 GO:0005515
Lele04g0125 1314 SMART tpr_5 751 784 IPR019734 GO:0005515
Lele04g0125 1314 Pfam SET domain 996 1057 IPR001214 GO:0005515
Lele04g0125 1314 MobiDBLite consensus disorder prediction 70 88 - -
Lele04g0125 1314 Gene3D Tetratricopeptide repeat domain 1063 1297 IPR011990 GO:0005515
Lele04g0125 1314 SUPERFAMILY TPR-like 635 783 IPR011990 GO:0005515
Lele04g0125 1314 SUPERFAMILY SET domain 999 1087 IPR046341 -
Lele04g0125 1314 Gene3D Tetratricopeptide repeat domain 618 798 IPR011990 GO:0005515
Lele04g0125 1314 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 570 660 - -
Lele04g0125 1314 SUPERFAMILY SET domain 831 1061 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0125 Lele-ChrLele04 722912 736270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele04g0125 SET 5.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1058 25 6836586 6842610 Lele04g0125 04 722912 736270 CCT
Lele01g0126 01 736198 759146 Lele04g0125 04 722912 736270 hybridization
Lele02g0125 02 732083 736728 Lele04g0125 04 722912 736270 hybridization