Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0120 ATGGAAAGGTCGGGTGCTAGTTCAGAACAATACGCCATTTCTTCTTCCTCCTCTTCTTCCACTGTTGGTGTAAATAATAGTAACGGTGACAGCAGTGCCGTTACTGAAACCTCCTGGTACGGGATGAGGTTAGCCCCTGCCGGCCCCCTCCGTTCTCCAGTTTCTTTTCTGTTAAATTACGCGGGCATGCTCCGCTCAAGTTCGTCAGCTCGCGATTCAGAGGCCGTGATAATCAACAGCGGAGTTACCACTTCGGAAATACGCTCTCAGCGTTCTGAGTCTGGCGCCGCGTGCAGTGGTAGTGCTAGTGAAGTTTCAATACGGATCATTGGGGCTGCAGAACAAGAACAGGGTAATGCGTTACGTTCCTTTTCTACAACCTCTCTGAATCAGCTTGGACAAGTCGATCATGATGATTTGATGGGAAATAGAGGGATGCCCACATTGGATGGCGATGAGGAGGGTCGCAGTGAAAGAGTCCCCCTAGTGTCTTCAACCACACTGGCCACTAGTGGACAGGTGGATGAAAATGTCGGCACTGCCTCGGAAAGCAACAATGGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATCTGTTGTTTTCATTCGTCAGCATTTGCAAGGTTTTTTTGTCACGATTTGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAGGCAGACAGCGCTGAAGGGAGATAGGAAAGTCTCAATTCTTGTCAGTATTTCTCTCGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGGAGTGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCCTTCTGGCATGCTATATTCATCATCTTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTATATATTACAAAAATGGAAGAGGTCATAACTTCCGCCGGCAGGGCCAAATGTTAACTCTGGTTGAGTACTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGCTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTTTTTTGCCTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTGTGCCACAATGGAACAGGTAAATGCTGCTGGCGGCCTATGTGCCATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAGTGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCGGCTGACCTGCGGACCTTTGGGGATGGATCAACAAGTCTATTTTTCCAGCTGTTTTAG 1461 0.4538 MERSGASSEQYAISSSSSSSTVGVNNSNGDSSAVTETSWYGMRLAPAGPLRSPVSFLLNYAGMLRSSSSARDSEAVIINSGVTTSEIRSQRSESGAACSGSASEVSIRIIGAAEQEQGNALRSFSTTSLNQLGQVDHDDLMGNRGMPTLDGDEEGRSERVPLVSSTTLATSGQVDENVGTASESNNGDSSSYQRYDIQQAAKWIEQILPFSLLLSVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRKVSILVSISLAFMLHVMCIYWWYRSDDLLYPLIMVPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFFFALKALSRKEVHYGICATMEQVNAAGGLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0120 486 MobiDBLite consensus disorder prediction 135 159 - -
Lele04g0120 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
Lele04g0120 486 MobiDBLite consensus disorder prediction 1 30 - -
Lele04g0120 486 SMART ring_2 425 462 IPR001841 -
Lele04g0120 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 486 IPR044235 GO:0061630|GO:1904294
Lele04g0120 486 SUPERFAMILY RING/U-box 418 468 - -
Lele04g0120 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Lele04g0120 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 480 IPR013083 -
Lele04g0120 486 CDD RING-HC_RNFT1_like 424 463 - -
Lele04g0120 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0120 Lele-ChrLele04 692833 697931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0120 44 486 C3H Transcription Factor Family AT5G01960 62.247 0.0 564