Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0118 ATGGCAATGGAAAATTATGCAGGACCTGCAAGGTGTTATCGTCAAATAAAAAACAAGCCTTACCCTAAATCACGCTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGCGTTGATGAGTTTCCTTTCTGCGTCCATCTTGTAAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCACTGGAAGCTGCCAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCTTTCCATTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCCGGAGCTGATAGGCTCCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAAGGTACCTGTGCTAGGGTTGCCATTGGTCAGGTCCTTCTTTCTGTCCGTTGCAAGGACAGCAACAGCCATAATGCCCAGGAATCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTCAACCGAACAGACTACTTGAAGTTCAAGTCGGAGAACAGGATCATGCCAGACGGTGTTAATGCAAAGCTTCTTGGATGCCATGGACCTTTGGCAAACCGTCAACCTGGAAGAGCTTTCCTGTCTTCTGCAACTGCTTAG 678 0.4543 MAMENYAGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHNAQESLRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0118 225 TIGRFAM uL16_euk_arch: ribosomal protein uL16 9 178 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 ProSitePatterns Ribosomal protein L10e signature. 112 133 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 FunFam 60S ribosomal protein L10 6 210 - -
Lele04g0118 225 SUPERFAMILY Ribosomal protein L16p/L10e 9 177 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 CDD Ribosomal_L16_L10e 45 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 Pfam Ribosomal protein L16p/L10e 16 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 PANTHER 60S RIBOSOMAL PROTEIN L10 9 217 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele04g0118 225 Gene3D Ribosomal protein L10e/L16 7 221 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0118 Lele-ChrLele04 685500 686710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0118 9 224 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.648 6.16e-141 391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0119 01 699445 701384 Lele04g0118 04 685500 686710 hybridization
Lele02g0117 02 685713 687595 Lele04g0118 04 685500 686710 hybridization