Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0109 ATGGGTCGACGAAAGCAAAGTAGACCCCATCGATCTGGCGGGGTTATACTAGAAACACAGGCAGCTGCTGGAGCAGAACGGGATAAACAGAAAATGCTGGAAACAGGGGGACAAGCAAAGGAGGATTTTGGTGAAGTTCACAATCCCTACTTTGTGGAAGTTGATAGGTCCAGCTGGTTATCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACCGATTTGAAGATGGCAGAAGGCTTTTCTGGTTTTGAACTTTCCGAGGACTTTTATCATGATTTCGAATATTCTTTAAGATTTCAGGTGTTTAATGCCAATCATATTCTTGGTCAAATTAAACTAGGCCATTGGCCTATAGTGGCTTATTCTGATATTCATCTAGAGTTTGTAAAAAGAGCAATGGATCATACAGAAACATGTACAGTGCTGTTATCTGGGGTTTTTGATGGTCCCGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTATCACATTGAGGCCAGTTCTTGGGATTAGGTTTTCTGAAGACATTCTCTCCCTTAGATTAAGGGTTGAGGTGCTAAAGAGTGCCTTTGATGCATGTGAGTCACTTCTAGATGGTTCCAGACAATTATGGAAGAAGAGTATGATGAATGTCATGTCTTGGCTACGTCCTGAAATTATGACATATGAGGTTAGATATGGGGCTGGTAGCAATATGAAAGCAGAAGTTGATCCACAGACAGAGATCAGAGATGATACTCGCTGCCCTCAGAGACATGTGAGGTTTGACCCTGAAAGTTTCTATGAAGCCATTAGGCCCTCAAAATCAGAACCAATGCTTCAAGAAGACATACATGACCTACTTCCTGAATTGAGACCGTATCAAAGGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAAAAAGAGCTGGAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTTATTCTCCTTTATGTGTGCCTGTGGATTTTATTGACACGAGTTCTAAAATGTTCGTTAATCCATTCAGTGGAAATATTTCCTTGTACTCAGAGACTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCTGGTATGTCCCAAGCTATGCTGCATATGTCAGTTATTTGCTCTAGTAATCTGTCAATTTTTATAACATTTAACTATAAAGGGAAGTTGAAACTCTTCACCTTTTCTGCAACAGATGAGATGGGGTTGGGAAAAACTGTTGAACTTCTTGCTTGCATCTTTACTCATCAGAGATCAGCATCTGAAAATGACATTCTTATTGACTCAGAGTTGCAAGTTAATGAGGATAGTAAGGTCAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGACTGTGTTGGTTATTCTCCTGAAGGAAAATCACTGAAATCAAAACTGGGATCTGAAAGCAAGAAATTTAAAACCACCATAGCTGTAAGGGATGGGGAATATGTGTGCCAAATATGCTCTGAACTAATACAAGCTACTGAATCTCCGATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATCAGATATGCAATCTCTATTACACATGGTGTCCCAAGACCTTCTCTTGCAGAAAATAGCAACCATGAGGAAAGTCATACACGTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGAGAGACACATCTTTCACCAATACATCTATGGTGAATATCAGTGAACTCGCCTCTGCGGACATTGTATTAACAACATATGATGTACTTAAAGAGGATCTGTCTCATGATTATGATAGGCATGAAGGTGATAGGCACTTTTTGCGATTTCAAAAAAGGTACCCAGTTGTTCCAACTCTTCTTACCAGAATATACTGGTGGAGAATTTGCCTGGATGAGGCTCAAATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGGCCATGCGGCTAAATGCAAAGTATCGTTGGTGCATTACGGGAACCCCCATTCAGCGAAAGCTTGATGACTTGCATGGATTATTACGATTCCTTAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAAGGAGATGTTGGAGCTATGGAATTTACACATAAAATCTTCAAACAAATCATGTGGCGCTCTTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCTCAGGAGGAGTGCCTTACTTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACATGAAACCTGTGTCAACTATGCTCATGAAATTATTGAGAGTTTGAGAAATGACATTCTTAATAGAAGTGTCACAGGTTCTGTTTCTTCAGATGATTTTTCTGATTCTTTCATCACTCACACAGAGGCCGGGAAGCTATTAAATGCTCTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGTTCTCTGCAACAGTCACCCATGACCATGGAGGAAATACTGATGGTCCTTATAAGTAAGACTAAGGTAGAAGGCGAGGAAGCTCTCAGGAGGTCAGTTGTTGCTTTAAATGGACTTGCTGCTATAAGCATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTTGGCCAAAGAGCATTCCGAAGACTTCCGCTTGGATCCTTTGTTAAATATTCACATTCATCATAACCTGGCTGAAATACTTCCACAAACTACAAACATTTCCCTTAAGCTCCCCTGCAAAGAAAGGCAGTTCTCTAAAACTGCGCAACTTAAGTCAAAAAAGCATACTCTTGAAAAGGTTGATTATTCTTTTGTTAAGAAGAAGAAAGGGAATGACCGGGAACCATTGAATATTACATCTAGCTTTTCAGAAAATGACTTAAATAGGCATCAGGAATTTGATGATGAATCTATCAGTTCTTTACAGTTATTGATAGCAGAATGTGAAGATTTGAAGCATAAATACTTATCTGTGTTCAGTTCGAAGCTATCTGCTGTCCAACAGGAGTTTCAAAAAGTGTATTTGCAGGTTGGCAACGCATATAGTGAGAGTACAAATGAGTCTACAACTTGGTGGTTAGAGGCTCTTCATCATTCTGAGCAGAACAAGGATTTTTCCAATGAGTTGCTCAGGAAGATTGAAGAAGCAATTGCAGGAACTTTAAACAATTCAAAGCGACCAAGATTTGCTACTCGTTTCCGGAGCACACACTCTCTGAAGTATCAAATCCAGACAGGCTTGGATCAATTAGAAACTTCTAGGAAAGTGCTGCTTGATCGAATCTTAGAAATTGATCAGACTATGGACAAACCAAAAGACGAGGACATTGAACGTGTGGGTAAATGTCAAAATTGCCAACCTGATTCTGATGGCCCACCGTGCATTTTGTGTGAACTTGATGAATTGTTTCAGGATTATGAAGCTAGGCTCTTCGTTCTGAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCGGTGGATTTGCAGAAGAAAAATTCTGCACTGAATCGTTTCCTTTCAAAGCTATCACAATCTAATCAGATTTCAAAAACATCTGATATTGGCTATGAAGAATTGAAAAAAAGAAATGTTGGAGAAAGAGTTGTGATTCCTGAATCGTACAGCAACAAGATAAATGATGACCAGAAAACAGAAAAAGTTTCAAGATCAGCATCTCAATTGGAAGTAATTCTTGGTGTATTAAAGAACTATTGCAAAACTCGGTTGGGAAAGGATAGTGTTTCAGCAGGCACCAAACATTTACATATTTTTGAGGGTATGCGAAAGGAGTTTGGCCATGCAAGGTCGTTGGCTTTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCCCGGTTGCACCTGAAGGCAAATGAAAACGACAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCATCAAGTTCAAACTTTTCCCATGATAAGTTTATGTCTTTGGCCTCGTTGTCACAAATAAAAGGAAAACTTCGCTACTTAAAGGGTTTGGTACAATTGAAACGACATCCATCGGAACATCCTGAAAGTTCTTCATTTACTCAGGAGGCAACTGCAATGTCAAACTTTTCAGAAGAGAAATGCGTACCTGCAACGAAAGTTGATGAGGATTCATGCCCAGTTTGCCAAGAAAAGCTGGGCCGCCAGAAAATGGTTTTTCAGTGTGGGCATGTTACGTGTTGTAAATGTTTATTTGCTATGACAGAGCAAAGGCTTCAAGATAGTAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGACAGCACACCGATTTTGCAAACATTGCATATGCTGTTGATAGACAGCATGAATCTTTCAAAACTTCTGCGCTGCAGAATGCTGACAGCTGTGAGAAATGTGAATCATCCATCTGTGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAATCACAAAAAGAATCTTGTGGATCAAGTCTACAGACCCTAAGGCTAAAGTTCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTATTGGAACATGCTTTTGCTGCCAATAATGTCACCTTCATTCGGATGAAAGGAGGCAGAAAATCACATGTTGCCATCAGTCAATTTAGAGGACACCAGAATGACAAAAAAGGAACATCACAGGAATCAACATCAAAATTTATTCAGGTTTTGTTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCGCAAGCAATCAGTCGTGTGCACCGAATTGGACAGCAAAAGAAGACTCTCATTCATCGTTTCATTGTGAAAGACACAGTTGAAGAGAGCATATATAAGCTGAACAGAAGCAGGGCTGGCCATTCAGTCATCAGTGGTAACACAAAAAATCAAGACCAGCCCATGTTGACCCTGAAAGATGTTGAAACCTTGTTAGCCGCTGCTCCATTAACGATACAAGAAAGTGATGAAAATCCCTCTGCAAGTTTAAGGCACTTGCCGCCTTCAATGGCCGCTGCTATTGCTGCTGAGAGGAGACTCAATGAACAAAGGCCATGA 5205 0.4071 MGRRKQSRPHRSGGVILETQAAAGAERDKQKMLETGGQAKEDFGEVHNPYFVEVDRSSWLSNEHLDISEVVLTDLKMAEGFSGFELSEDFYHDFEYSLRFQVFNANHILGQIKLGHWPIVAYSDIHLEFVKRAMDHTETCTVLLSGVFDGPDEGVSGLIHLASLKFITLRPVLGIRFSEDILSLRLRVEVLKSAFDACESLLDGSRQLWKKSMMNVMSWLRPEIMTYEVRYGAGSNMKAEVDPQTEIRDDTRCPQRHVRFDPESFYEAIRPSKSEPMLQEDIHDLLPELRPYQRRAAFWMVEREKKRAGGQGERERSHFYSPLCVPVDFIDTSSKMFVNPFSGNISLYSETHAPCVVGGILAGMSQAMLHMSVICSSNLSIFITFNYKGKLKLFTFSATDEMGLGKTVELLACIFTHQRSASENDILIDSELQVNEDSKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPEGKSLKSKLGSESKKFKTTIAVRDGEYVCQICSELIQATESPIASGATLIVCPAPILPQWHDEIIRYAISITHGVPRPSLAENSNHEESHTRPGSLKTCVYEGVRDTSFTNTSMVNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESNAAAATEMAMRLNAKYRWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDVGAMEFTHKIFKQIMWRSSKEHVADELQLPSQEECLTWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILNRSVTGSVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRSVVALNGLAAISIMQKDFSQAALLYIEALTLAKEHSEDFRLDPLLNIHIHHNLAEILPQTTNISLKLPCKERQFSKTAQLKSKKHTLEKVDYSFVKKKKGNDREPLNITSSFSENDLNRHQEFDDESISSLQLLIAECEDLKHKYLSVFSSKLSAVQQEFQKVYLQVGNAYSESTNESTTWWLEALHHSEQNKDFSNELLRKIEEAIAGTLNNSKRPRFATRFRSTHSLKYQIQTGLDQLETSRKVLLDRILEIDQTMDKPKDEDIERVGKCQNCQPDSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNSALNRFLSKLSQSNQISKTSDIGYEELKKRNVGERVVIPESYSNKINDDQKTEKVSRSASQLEVILGVLKNYCKTRLGKDSVSAGTKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCASSSNFSHDKFMSLASLSQIKGKLRYLKGLVQLKRHPSEHPESSSFTQEATAMSNFSEEKCVPATKVDEDSCPVCQEKLGRQKMVFQCGHVTCCKCLFAMTEQRLQDSKFHKWVMCPTCRQHTDFANIAYAVDRQHESFKTSALQNADSCEKCESSICVKGSYGTKIEAITKRILWIKSTDPKAKVLVFSSWNDVLDVLEHAFAANNVTFIRMKGGRKSHVAISQFRGHQNDKKGTSQESTSKFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQQKKTLIHRFIVKDTVEESIYKLNRSRAGHSVISGNTKNQDQPMLTLKDVETLLAAAPLTIQESDENPSASLRHLPPSMAAAIAAERRLNEQRP 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0109 1734 ProSitePatterns Zinc finger PHD-type signature. 452 518 IPR019786 -
Lele04g0109 1734 SMART ultradead3 285 717 IPR014001 -
Lele04g0109 1734 MobiDBLite consensus disorder prediction 1 33 - -
Lele04g0109 1734 Gene3D - 519 769 IPR038718 -
Lele04g0109 1734 Gene3D - 1476 1718 IPR027417 -
Lele04g0109 1734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1519 1691 IPR001650 -
Lele04g0109 1734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1396 1475 IPR013083 -
Lele04g0109 1734 CDD SF2_C_SNF 1513 1651 - -
Lele04g0109 1734 SUPERFAMILY RING/U-box 1413 1475 - -
Lele04g0109 1734 ProSiteProfiles Zinc finger RING-type profile. 1422 1470 IPR001841 -
Lele04g0109 1734 SMART helicmild6 1547 1640 IPR001650 -
Lele04g0109 1734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1687 IPR027417 -
Lele04g0109 1734 SMART PHD_3 451 519 IPR001965 -
Lele04g0109 1734 Pfam Zinc finger, C3HC4 type (RING finger) 1422 1469 IPR018957 GO:0046872
Lele04g0109 1734 Pfam SNF2-related domain 400 844 IPR000330 GO:0005524|GO:0140658
Lele04g0109 1734 SMART ring_2 1422 1469 IPR001841 -
Lele04g0109 1734 Pfam Helicase conserved C-terminal domain 1516 1640 IPR001650 -
Lele04g0109 1734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 518 IPR013083 -
Lele04g0109 1734 SUPERFAMILY FYVE/PHD zinc finger 448 520 IPR011011 -
Lele04g0109 1734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 746 IPR027417 -
Lele04g0109 1734 CDD DEXQc_SHPRH 400 748 - -
Lele04g0109 1734 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 400 1732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0109 Lele-ChrLele04 641755 653991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0109 526 842 RAD5 or RAD16-like Gene Family AT5G22750 29.503 3.94e-33 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele04g0109 SNF2_N 4.7e-70 CL0023