Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0101 ATGTCTCTTCATCAACGTGCTCGCCGTCTTCTGCTGGACCATGAATCAAACCCAACACCACCAGATAGCATATACAGGTCGAGGATGACTTATACAAGTGATGCTAATTTTGACACCAACATGGTGATTATATTAGCAGCCTTGCTCTGTGCACTTATATGCGCTTTGGGTCTGAATGCAATAGCACGATGCGCCCTCAGATGTAGCCGAAGGTTGGCTTTTGAGACGGAAGAGGAGGCGGCAGCTCGTTTAACTGCGAAAGGGATGAAGAAGAGCGCGTTGCGTCAGATACCTATAGCCGGGTGTGGTTCATCAGGGGCTGAACTTGCAGGCACAGATTGTCCGATTTGCTTAGGGGAGTTCGTGGACGGAGAGAAAGTGAGGGTGCTTCCAAAATGCAACCATGGATTCCATGTAAAGTGCATAGACACGTGGCTGCTTTCTCATTCGTCTTGCCCAACTTGCAGGCAGTCTCTTCACGAACCCTCCAATTCTCAGGCTGTGTCTGTACCTGCAGCTGATCAGGCTGTCTAA 534 0.4963 MSLHQRARRLLLDHESNPTPPDSIYRSRMTYTSDANFDTNMVIILAALLCALICALGLNAIARCALRCSRRLAFETEEEAAARLTAKGMKKSALRQIPIAGCGSSGAELAGTDCPICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLHEPSNSQAVSVPAADQAV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0101 177 PANTHER RING-H2 FINGER PROTEIN ATL78 7 168 IPR044602 GO:0016567|GO:0016740
Lele04g0101 177 CDD RING-H2_PA-TM-RING 113 156 - -
Lele04g0101 177 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele04g0101 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Lele04g0101 177 Pfam Ring finger domain 113 156 IPR001841 -
Lele04g0101 177 SMART ring_2 114 155 IPR001841 -
Lele04g0101 177 SMART FANCL_C_2 110 173 - -
Lele04g0101 177 SUPERFAMILY RING/U-box 107 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0101 Lele-ChrLele04 606939 607472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0101 9 177 C3H Transcription Factor Family AT3G10910 52.973 1.62e-55 171