Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0072 ATGGATGAATCATCTCTGCCATCGACGATGATCTTCTCTGGATTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCTAATGATGTTGCCACCATGGAAAAGTTCCCTTTTGTTCAACTCAGAAACGTCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTTTTCGAGGAGATTCAGGAAACAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAGGAAAGCAGCTCACTCTGGAGTCTCATACAGTTAGAGTTTATTTCCAATCAATTCTATGTGCTTGTGAAGGAGATGGGAAGGGCTTTAGATATCCTTCCTCTGAGCTTGCTTAATATCACAGCAGATATAAGAGAGCAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGCTGAGTTGTTCATTGATCCTCGTGAGCTGCAACGAAGAGAGCAGCTTCTGCATGTAATGGCCCATAACACTCTACAGAACAAGAAGAACAAGGGAATTCCTGAGTTTGGGAAGGTGCAACAAATATTAAGCAGCATTGGTTTGAGAACCCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGATTGAAGCTCAGAATCAGGCAGGTACAGGAGGGTTAATCGTTATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCAAAATCCTTGATATTCAGAGACAAGATAGATGAAGACTGTAAGCCAGCGGTGTCCGCATTCACATATAAGAACTCTGATAATTCTTTTTCTTCACCTTCTTCTCAGATGACATCGTCAGCACCTAATGTTCCTGACGAATTTCGATGCCCAGTTTCACTTGATTTAATGAGAGATCCGGTGATTGTATCATCTGGGCATACATATGATCGAATTTCAATTGCACAGTGGATAAACTCGGGACATCACACTTGTCCAAAAAGTGGGCAAAGATTAATCCACACGGCTCTCATACCCAACTATGCATTGAAGAGTCTTGTGCAGCAATGGTGCGATGAGAATAACGTCCCAGCGAATGAGCGGACATCATCTTCTTCCTCGACTTCGGAGGATCCCAACAGAAAGGACAACTCAAACGAAAATACCGTTGATCATATCTCTGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTGGGAAAATTGGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTAAGATTACTGGCAAAAACTGGGATGGATAATCGAAGAATCATCGCCGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTGGGATCCCATGATCCAAGAATCCAGGAGCATGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTTTGATAGTGGCTGCCGGAGCAGTGGATCACATAGTACAAGTGCTTGAATCAGGGAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGTTTGACTATGATTGATGACTGCAAGGTAGAAATCGGAGCTCGTCCAAGGGCCATACCCGCATTAGTAGGACTGTTAAGAGTGGGAACTCCTATTGGGAAAAGAGATGCTGCAACTGCCATTTTCAATCTTGCAGTTTACAATCCTAACAAGGCCAAAATCGTTAATGCTGGGGCTGTTTCTTTGCTCATCGAGTTGCTTATGGATGATAAGGCTGGGATCACAGATGATTCTTTGGCGGTGCTTGCTATGCTTCTGGGTTGCTCTGAAGGTTTGGAGAAGATAAGGAACAGTAAAGTGTTGGTGCCTCTTTTGATTGATCTTATGAGGTTTGGGTCAGCCAAAGGGAAGGAGAATTCTATAACACTTTTGCTGGGGTTGTGCAAGGAAGAAGGTGAAGTGGTGGCAAGGAGACTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAAAGCTTGGCCGCTGACGGTTCTTTAAGAGCACGAAGGAAGGCCGATGCTTTGCTTAGACTGCTCAATATATGCTGCCCTCAGCCTCTTCATTCTCTTTGA 2073 0.4375 MDESSLPSTMIFSGFLPTGSLLDSLVHISNDVATMEKFPFVQLRNVSSMIRRVKLLSSLFEEIQETDSPLPPSSILCFTELFSVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNITADIREQVELLHKQAKAAELFIDPRELQRREQLLHVMAHNTLQNKKNKGIPEFGKVQQILSSIGLRTPSDYDREISKLEIEAQNQAGTGGLIVMSNIHNLISLVTYSKSLIFRDKIDEDCKPAVSAFTYKNSDNSFSSPSSQMTSSAPNVPDEFRCPVSLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCDENNVPANERTSSSSSTSEDPNRKDNSNENTVDHISAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIVAAGAVDHIVQVLESGKTMEARENAAAAIFSLTMIDDCKVEIGARPRAIPALVGLLRVGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVSLLIELLMDDKAGITDDSLAVLAMLLGCSEGLEKIRNSKVLVPLLIDLMRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNICCPQPLHSL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0072 690 Gene3D - 42 133 IPR036537 GO:0007166
Lele04g0072 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 359 IPR013083 -
Lele04g0072 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 525 567 IPR000225 GO:0005515
Lele04g0072 690 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Lele04g0072 690 MobiDBLite consensus disorder prediction 358 384 - -
Lele04g0072 690 Gene3D - 370 538 IPR011989 -
Lele04g0072 690 Pfam U-box domain 285 355 IPR003613 GO:0004842|GO:0016567
Lele04g0072 690 SUPERFAMILY RING/U-box 275 358 - -
Lele04g0072 690 Pfam Armadillo/beta-catenin-like repeat 432 469 IPR000225 GO:0005515
Lele04g0072 690 Gene3D - 542 685 IPR011989 -
Lele04g0072 690 FunFam RING-type E3 ubiquitin transferase 496 683 - -
Lele04g0072 690 SUPERFAMILY ARM repeat 402 679 IPR016024 -
Lele04g0072 690 MobiDBLite consensus disorder prediction 358 373 - -
Lele04g0072 690 SMART arm_5 596 637 IPR000225 GO:0005515
Lele04g0072 690 SMART arm_5 385 428 IPR000225 GO:0005515
Lele04g0072 690 SMART arm_5 430 470 IPR000225 GO:0005515
Lele04g0072 690 SMART arm_5 555 595 IPR000225 GO:0005515
Lele04g0072 690 SMART arm_5 514 554 IPR000225 GO:0005515
Lele04g0072 690 SMART arm_5 471 512 IPR000225 GO:0005515
Lele04g0072 690 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Lele04g0072 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Lele04g0072 690 CDD RING-Ubox_PUB 289 331 IPR045210 -
Lele04g0072 690 PANTHER U BOX DOMAIN-CONTAINING 44 680 - -
Lele04g0072 690 FunFam RING-type E3 ubiquitin transferase 284 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0072 Lele-ChrLele04 424758 426830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0072 19 676 U-box Gene Family AT3G46510 37.613 1.06e-123 381