Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0066 ATGACGAGCCAAGATTCCCAGGGTTTTACATGGCACTACACGGAGCTGGATGACCGAAATCTCGAAATCCGAGGCCGAACGTTTTTCTTCGTGGTCGTGCTGTTCTCCATTATCCTTATTGTGGCCCTTCTCTTCCTTTATGCTCGCTGGATCATGAGGTACCGGGGCCAGCATCCCACCACCTACCATTCCAACGGACCGCCCCTCGCGCCGCCGCCTCCTCCGCCACAGGGCCTCGACCCCGCTTCAATCAAGAAATTGCCTATAGTTTTGCACCAAAGGACTTCGGATGCCAACACTAAATTGGAGGAAACAGAGTGCTGTATTTGCCTCGGGACGTTCAAAGATGGCGAGAAATTGAAGGTTTTGCCCGGCTGTGACCATAGCTTCCACAGTGAATGTGTTGATAAGTGGCTTTTCAATCACTCTAGTTGTCCTATCTGCAGATCTTCTCTCAAGGTTCATTCTTCCTTTCCCAAGATCTTGATTCAAGAACCACCCAATCGGATCAATCTTCCCCTGTAG 525 0.5048 MTSQDSQGFTWHYTELDDRNLEIRGRTFFFVVVLFSIILIVALLFLYARWIMRYRGQHPTTYHSNGPPLAPPPPPPQGLDPASIKKLPIVLHQRTSDANTKLEETECCICLGTFKDGEKLKVLPGCDHSFHSECVDKWLFNHSSCPICRSSLKVHSSFPKILIQEPPNRINLPL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0066 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 155 - -
Lele04g0066 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 155 IPR013083 -
Lele04g0066 174 SMART ring_2 107 148 IPR001841 -
Lele04g0066 174 SUPERFAMILY RING/U-box 100 156 - -
Lele04g0066 174 Pfam Ring finger domain 106 149 IPR001841 -
Lele04g0066 174 CDD RING-H2_PA-TM-RING 106 149 - -
Lele04g0066 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lele04g0066 174 FunFam RING-H2 finger protein ATL66 71 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0066 Lele-ChrLele04 399972 400496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0066 4 157 C3H Transcription Factor Family AT3G11110 44.805 1.02e-35 120