LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0060	ATGCAGAACCCGGGCACGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGAACGGCACCATGGAAAGTGAATCTCAAAAGCGGAACTCCTGCAACTCTTTGGTTTTGCTTGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAAAGAAGTGGAGGAGAAGGGCTGCGACATCAACGTGGCAAGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGGTTGGGAGAAGAGGACAGCCCTCATGATCGCGTCTTTATTTGGAAGCACTCGAGTGTTGAAGTACGTAATTGAGACCGGCATGGTTGATGTGAACAAAACCTGTGGTTCTGAAAGTGCCACGGCTCTCCATTGTGCTGTTGCTGGTGGCTCTCACTCTTCAATTGAGATTGTTCAGCTCTTGCTTGATGCCGGTGCCGATGCTGATTGCATCGATGCTAGCGGGAATAAGCCTATCAACTTAATTGCCCCCGCCTTCAATTCCTTCTCCAACGCAAGAAGAAAGGCCATAGAGTTGTTGCTCAGAGGTGGGCAAGGAGATCAAATCATCAATCAGGGAATGGAGCAACAAAAAATTGCAGTGCCTACTTTGTCCTCAAAAGAAGGAACTGAGAGAAAAGAATATCCTGTTGATGTATCATTGCCTGACATAAACAGTGGTATATATGGAACGGACGAGTTTAGAATGTACAGTTTTAAGGTGAAGCCGTGTTCAAGGGCTTACTCACATGACTGGACCGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCACGTAAGTACCCTTACAGCTGCGTTCCCTGCCCTGAGTTTCGCAAGGGCACATGCCAGAAGGGAGATGCTTGTGACTATGCACACGGTGTTTTCGAGTCCTGGCTCCATCCTGCTCAATACAGAACAAAGCTTTGCAAGGATGAGATTGGATGCGCTAGGAAAGTTTGTTTCTTTGCTCACAAGCCTGAAGAGTTGCGCCCTGTGTATGCTTCTACTGGCTCTGCTGTGCCTTCTCCAAAGTCCTTGGCTAGTGTACTTGATATGACATCAATGAGTCCATTGGCTCTTAGTTCCTCATCTTTGCCCATGCCGGCTGTTTCAACTCCGCCTATATCTCCCATTGCAGCCTCATCACCTCCTAAGAGTGGGGGCTTGTGGCAGAACAAAAGAAACCTCACTCCACCATCATTGCAGCTCCCCGGGAGCAGGCTGAAGGCTACCCTGAGTGCTAGGGATTATGGTCTGGATATGGAATTGCTTGGACTAGAAAGTCCTGCAAACCAGCATCAGCAGCAATTGATAGAAGAATTGGCTCGAATCTCCTTCCCTTCGCTGCGGAACAAAGACTTCAGTAGGATTGGTAATTTGAACCCAACAAACCTTGATGACCTCCTGGGGTCTGTTGATCATTTTGTATCACCTCAATTACATGGCCTTTCAGCGCCTAGTCAATTGAACTCTCCAAGTGGGCTTCAAATGTGCCAAAACATGAACCCTCTTCGTGCAAGCTATCCAACTAACATGTCTTCCTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCATCAGCTGCTGTGGCGGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCAAAGAGAAGCCAGAGTTTTATTGATCGCGGTGAATCAGTGAGCCACCATCTTGGACTTTCTTCACCTTCCCACCCCTCCTGTAGGGCGTCCTCTGCTCTTTCAGATTGGAGTTCTCCTGATGGGAAATTGGATTGGGGCATGAATGGGCATGAGATGCACATGCTGAAGAAGTCTGCTTCATTCGGGTTGGGGAATAATATGGCGTCTGCCACTTCCATGACTCCATCAGAACACGGTGAACCAGATGTGTCATGGGTTCATTCGTTGGTTAAAGATGTGCCGTCCGAAGAGTTGTGTTGCTGA	1935	0.4822	MQNPGTCSGSKSKLSPSNGTMESESQKRNSCNSLVLLELSASDDLEAFRKEVEEKGCDINVASFWYGRRIGSKKMGWEKRTALMIASLFGSTRVLKYVIETGMVDVNKTCGSESATALHCAVAGGSHSSIEIVQLLLDAGADADCIDASGNKPINLIAPAFNSFSNARRKAIELLLRGGQGDQIINQGMEQQKIAVPTLSSKEGTERKEYPVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACDYAHGVFESWLHPAQYRTKLCKDEIGCARKVCFFAHKPEELRPVYASTGSAVPSPKSLASVLDMTSMSPLALSSSSLPMPAVSTPPISPIAASSPPKSGGLWQNKRNLTPPSLQLPGSRLKATLSARDYGLDMELLGLESPANQHQQQLIEELARISFPSLRNKDFSRIGNLNPTNLDDLLGSVDHFVSPQLHGLSAPSQLNSPSGLQMCQNMNPLRASYPTNMSSSQVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGESVSHHLGLSSPSHPSCRASSALSDWSSPDGKLDWGMNGHEMHMLKKSASFGLGNNMASATSMTPSEHGEPDVSWVHSLVKDVPSEELCC	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0060	644	SMART	ANK_2a	113	145	IPR002110	GO:0005515
	Lele04g0060	644	SMART	ANK_2a	78	108	IPR002110	GO:0005515
	Lele04g0060	644	MobiDBLite	consensus disorder prediction	558	581	-	-
	Lele04g0060	644	Pfam	Ankyrin repeats (3 copies)	55	145	IPR002110	GO:0005515
	Lele04g0060	644	Gene3D	-	7	205	IPR036770	-
	Lele04g0060	644	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lele04g0060	644	ProSiteProfiles	Ankyrin repeat region circular profile.	113	147	-	-
	Lele04g0060	644	ProSiteProfiles	Zinc finger C3H1-type profile.	268	295	IPR000571	GO:0046872
	Lele04g0060	644	SUPERFAMILY	Ankyrin repeat	32	158	IPR036770	-
	Lele04g0060	644	MobiDBLite	consensus disorder prediction	380	404	-	-
	Lele04g0060	644	SMART	c3hfinal6	268	294	IPR000571	GO:0046872
	Lele04g0060	644	SMART	c3hfinal6	303	326	IPR000571	GO:0046872
	Lele04g0060	644	PANTHER	UNKEMPT FAMILY MEMBER	38	637	IPR045234	-
	Lele04g0060	644	Gene3D	-	270	331	-	-
	Lele04g0060	644	MobiDBLite	consensus disorder prediction	560	581	-	-
	Lele04g0060	644	ProSiteProfiles	Ankyrin repeat profile.	113	148	IPR002110	GO:0005515
	Lele04g0060	644	MobiDBLite	consensus disorder prediction	385	404	-	-
	Lele04g0060	644	FunFam	Zinc finger CCCH domain-containing protein 66	226	294	-	-
	Lele04g0060	644	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	273	293	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0060	Lele-ChrLele04	370130	372064	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0060	35	636	C2H2 Transcription Factor Family	AT5G12850	39.939	2.02e-136	414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele04g0060		Ank_2	8.2e-08	CL0465