Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0055 ATGAGCTCTGCTAATGCCCATAGTCATCCCCCGCTTCACTCGGACTCCTCCGACACCGATTCCGACCACGGGGAGTCCAGCTCGGTGCTTCTTCGCCACACGGACCTCTCAGGCTCCATTTTCAAATCCTATTTCGAGTTCATCGGTCAGTCATCGGCAACCGCTGCTGACCTTTCAAAGATCCAGTCTTTTCTCACATCCTCCTCCTCCGGCGCTCTATCATGCCTGATATGCCTCGAACGCATCAGAGGCTCCGACCCCACTTGGTCCTGCACCTCCCTCTGCTACGCCGTCTTCCATCTTTTCTGCATACAGAGCTGGGCGCGCCAGGCATCCGACCTCGCTGCCGCACGCGTCGCAAACCGCCTACCTGTTACAGCTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCTAAATGCAGGGCTGAATACTCCAAAACTCAGATCCCTAAATCCTATGTGTGTTTCTGTGGAAAATTGGAGAATCCTCCAAGTGATGATCCCTGGGTATTGCCACATTCATGTGGTGAGGTTTGTAATAGGCCGTTGAAGAACAATTGCGGGCATTATTGCTTGTTGCTGTGTCATCCAGGGCCATGCCCATCGTGCCCAAAGCTTGTCAAGTCTCGATGCTTTTGCGGGTCTCTTCAAGACGTTCGCAGATGCGGGTATAAGGAATTTTCCTGTAACAATCCTTGTTCGAAGCTCTTGGACTGTGGTGTTCACAGGTGTTCTGAGATCTGTCATGTTGGCCCCTGCCCACCTTGCCGAGCCCGTGGAGTTTTTAAGTGCCAATGCGGGCAGAAAAAGGAGGAGAGGGAGTGTTGCGATCGCATTTTTCAATGCGATACTCCATGCGAGAAGCTTCTTAGCTGCGGGAAGCATATTTGTGAGAAAGGATGTCATTCGGGTGGGTGTGGCGACTGCCCTTTTCAGGGTAAGAGAACGTGCCCGTGTGGGAAGAGGATTTATAAAGACATTCCTTGTGATGCTGTGGTACAATTGTGTGGAGCGACTTGCGATAAAATGCTCAGTTGCGGATATCACAAGTGCCCTGAGAGATGCCACCGTGGGCAATGCATTGAGACCTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGAGGTCCCTTGCTGTCAAGAGTTGTCATGCGATAGGAAGTGTCAGAGGATACGTGACTGTGGGCGGCATCCATGTAAACGTCGCTGTTGTGATGGTGACTGCCCTCCATGTTCCGAGATATGTGGCAAGAGGCTTCGATGTAAAAACCATAAATGTCCTTCTCCATGCCACAGGGGTCCCTGTGCGCCATGTCCAATAATGGTGACAATCTCATGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGAATCAAAAGCCACCTAAGTGCCCAAAACGTTGTCCCATTACTCCTTTATGCAGGCATGCACCAAATTCCAAGCCTCACAAATGTCATTATGGAGCCTGTCCTCCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCTTGTGGCCACAAATGCAAATTAAGGTGTCATGGTCCAAAACCTCCTCCTAATCCAGAGTTTACACTGAAGCCAAAGAAAAAGAAGATAATACAGCAGAGTGAAGGTGTTCCTGGCATTCCCTGCCTTCCTTGTCCTGAACTTTTATGGAGATCATGTGTTGGACAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTGATAGATCGCAATTTTGCTGTGAAAATTTGTGTGGAAACCCTCTACCATGCGGTAATCATTTTTGTACTAAAACCTGTCATGCCTTAGAGACACTGTCTTCCTTGCACAAGCTACAGAGAAGTGAGCCTTGTGAAGATTGTTGTCTTCCATGCGAAAAGGTAAGAGAGCCTAAGTGTCCACATCACTGCCCTCAGCCTTGCCATCCTGGGGAATGCCCTCCATGCAAAGTGCTCATTAAACGGTCTTGTCATTGTGGCTCATTGGTCCATGTTTTTGAGTGCATCTATTACAACAGCTTGTCTGCCAAGGATCAAGAGACTGTTCGATCATGCCGTGGGCCTTGTCACAGAAAGTTGCCATATTGTACACATCTGTGCCCAGAGACATGTCATCCTGGTCAATGCCCATATCCTGATAAATGTTCTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACTCTGAAGAAAGAGTGGCTATGTCAAGATGTTCAAGCAGCCTATCATCGTGATGGTTGCCATCCCAGAGATATACCGAAAAATCACTTCGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAAGTTGTCGAGTCAGAACTGCATTTACGTAAATCCCAAGTTGTGGAGGAAAAAGCGCCCGAGACTGGAAAGTCAGCACCAAAACGACGGAGAAGGAGGGAACGCGTACAGGAGTCCAACCAATCAACAAAACTGCAGAAAATTGCATCTACTGCGAAGCGGCTTCTTCTATCTGTCTGTCTTTTTGTGGCCCTTCTTGCGGCCATATATTATGGTTACAAGGGTCTTTTATGGCTCAATGATTGGATGAATGAAGTTGATGAGCGAAGACACAGAAGATATTCTCGAATCTCATAA 2622 0.4828 MSSANAHSHPPLHSDSSDTDSDHGESSSVLLRHTDLSGSIFKSYFEFIGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRGSDPTWSCTSLCYAVFHLFCIQSWARQASDLAAARVANRLPVTADKAAESATWNCPKCRAEYSKTQIPKSYVCFCGKLENPPSDDPWVLPHSCGEVCNRPLKNNCGHYCLLLCHPGPCPSCPKLVKSRCFCGSLQDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVFKCQCGQKKEERECCDRIFQCDTPCEKLLSCGKHICEKGCHSGGCGDCPFQGKRTCPCGKRIYKDIPCDAVVQLCGATCDKMLSCGYHKCPERCHRGQCIETCRTVVRKSCRCGSLKKEVPCCQELSCDRKCQRIRDCGRHPCKRRCCDGDCPPCSEICGKRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMNQKPPKCPKRCPITPLCRHAPNSKPHKCHYGACPPCRLPCEEEYPCGHKCKLRCHGPKPPPNPEFTLKPKKKKIIQQSEGVPGIPCLPCPELLWRSCVGQHIGAERMMVCSDRSQFCCENLCGNPLPCGNHFCTKTCHALETLSSLHKLQRSEPCEDCCLPCEKVREPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSLVHVFECIYYNSLSAKDQETVRSCRGPCHRKLPYCTHLCPETCHPGQCPYPDKCSKKVTVRCKCQTLKKEWLCQDVQAAYHRDGCHPRDIPKNHFGIGLIPCNSDCKSKVQVVESELHLRKSQVVEEKAPETGKSAPKRRRRRERVQESNQSTKLQKIASTAKRLLLSVCLFVALLAAIYYGYKGLLWLNDWMNEVDERRHRRYSRIS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0055 873 CDD NF-X1-zinc-finger 337 386 - -
Lele04g0055 873 CDD NF-X1-zinc-finger 230 278 - -
Lele04g0055 873 SMART znfxneu3 637 655 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 700 721 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 595 631 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 484 505 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 SMART znfxneu3 513 531 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 CDD NF-X1-zinc-finger 390 438 - -
Lele04g0055 873 CDD NF-X1-zinc-finger 176 224 - -
Lele04g0055 873 ProSitePatterns Zinc finger PHD-type signature. 75 141 IPR019786 -
Lele04g0055 873 MobiDBLite consensus disorder prediction 789 817 - -
Lele04g0055 873 CDD NF-X1-zinc-finger 283 330 - -
Lele04g0055 873 CDD NF-X1-zinc-finger 417 465 - -
Lele04g0055 873 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 347 365 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 513 522 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 639 654 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 701 719 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 595 605 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 Pfam NF-X1 type zinc finger 293 311 IPR000967 GO:0005634|GO:0008270
Lele04g0055 873 ProSiteProfiles Zinc finger RING-type profile. 75 142 IPR001841 -
Lele04g0055 873 SUPERFAMILY RING/U-box 72 153 - -
Lele04g0055 873 MobiDBLite consensus disorder prediction 1 26 - -
Lele04g0055 873 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 52 509 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0055 Lele-ChrLele04 325583 331397 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele04g0055 zf-NF-X1 0.003 No_clan