Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0037 ATGTCTTTTATCGGCACTCAACAGAAATGCAAGGCTTGTGAGAAAACGGTCTATCCTGTTGATCAACTATCTGCCGATGGCACTTCTTACCATAAGGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACCTTAAAGCTAAGCAACTATTCCTCAATGGAAGGTGTCCTTTATTGCAAGCCTCATTATGAGCAGCTCTTCAAGGAGACGGGCGGTTTCAACAAAAACTTCCAGTCACTTTACCTGCATCATATAGCATCACATATCATCCAGAAAGTTGTCAGGGTCGACCCTTATGCCTCTTCTCTCCATCTTTTTCATGGAAATATGAATGAGTGCGATTTGGAAGATGTATCTTACTTGAAGACTTCTACTGAGAATCAAGCAGATCGGACTGACAAGGGGGTTGCAGAATTATTACAAATTATAACCCCTTCGTGCCAAGCCGATTATCGAGGATCTCTGCTTTCTACGATTTCTCCAAAGCGTACCTTACTGCTTTTAATGACAAATTCGAAGAGGGTTGCTGAATTGGGCTTAAAGTGCGATTTCGTACCTCAGGAACAGAGATTGATGTTGGAATTGATGCCTGAGGTTTTGCTTTCTCCTAAAGACAGAATCAAAGAGAGTTCTATCTATACGTCTGATGAAACCGATGAGTTCTCTGCTGCATCCGCAAGAGTCCTTGTTGTATATGCAATTGTGGCTGCTTATCAGTTAAGATGGTTTATTTCTCAGGTTAATTATACTCACTTAGGAAAGTTGTGCGGATTATTGATACCTTCTGCGCTTACTGCTCTTGACCATTGGTCGCCGGAGGTGAAGGGACATGGTATGATTAGCTTCTCTCATCTTGCAAAAAATGTGGACACTACTGAGCTCGGTGGGTATGCAGATGTAATTCTTGATGCCTGCTGCCAGAATATTGCAGCTAGCGATGAGATCTGGCTGAAATTTGAAACATACTTGTGGAAGAGATGGTATGAAAGAATACTAAATGAGATGTTAAGTCGCTTGGAGCGCCAGCCCAGAAACAAAGAACGTCGCATTGCTTGCCTTGAATATGTTGATTCCTTATTTGATGGAGTTGCTCTTGTGCTATTAGCTCACTTTAGGCGCATTTTCCCGTTGTTCTTTCAGTGGATGCATGCTGATGATGATGAGACCCTTATATTGGTGGGTGGTATTATATACATGCATTTTGGAAGTCATTCTCATCCTACTTACCAATGCAGAAGTTTTAGAACTTAA 1248 0.4199 MSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGGFNKNFQSLYLHHIASHIIQKVVRVDPYASSLHLFHGNMNECDLEDVSYLKTSTENQADRTDKGVAELLQIITPSCQADYRGSLLSTISPKRTLLLLMTNSKRVAELGLKCDFVPQEQRLMLELMPEVLLSPKDRIKESSIYTSDETDEFSAASARVLVVYAIVAAYQLRWFISQVNYTHLGKLCGLLIPSALTALDHWSPEVKGHGMISFSHLAKNVDTTELGGYADVILDACCQNIAASDEIWLKFETYLWKRWYERILNEMLSRLERQPRNKERRIACLEYVDSLFDGVALVLLAHFRRIFPLFFQWMHADDDETLILVGGIIYMHFGSHSHPTYQCRSFRT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0037 415 CDD LIM1_SF3 6 68 - -
Lele04g0037 415 Gene3D Cysteine Rich Protein 4 74 - -
Lele04g0037 415 PANTHER OS06G0694100 PROTEIN 325 392 - -
Lele04g0037 415 SMART lim_4 9 61 IPR001781 -
Lele04g0037 415 Pfam LIM domain 10 65 IPR001781 -
Lele04g0037 415 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lele04g0037 415 SUPERFAMILY ARM repeat 218 390 IPR016024 -
Lele04g0037 415 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele04g0037 415 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lele04g0037 415 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele04g0037 415 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0037 Lele-ChrLele04 222216 227885 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele04g0037 LIM 2.8e-12 CL0167