Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0023 ATGTCCCCTAAACCCTCGGGAACCTCTGAATTGGAAGATAGACTAGGTAATTTCAAGCCCTTCTCGGAGTCGGGACAGTGCTGTAGGTCCATTAGCGAGACGGTTGATGGTTCGCATCAATTCACCATAAAGGGATATTCTTTGGCCAAAGGGATGGGCGCTGGCAAGTGTAGAATGAGCGACACTTTCAGCGTTGGTGGTAATGATTGGACCGTATATTTTTATCCGGACGGCAAGAACCCAGAGGACAATTCCACGTACGTTTCGGTTTTCATAGCGTTGGCGAGCGAGGGAACCGGGGTGAGAGCTTTTTTCAAGTTGACTTTGGTGGATCAGAGTGAGAAAGGGAATGATAAGGTACATAGCCATTTTGATTGCCCGCTCGAGAGTGGACCCTATACGTTGAAGTATAGAGGCAGCGTATGGGGTTACAAAAGATTTTTCAGAAGAACACTATTGGAAACTTCGGAGTATCTGAAAGATGATTGCCTTGTAATGCATTGCACTGTTGGTGTGGTCCAAACACGTTTTGAGGGAAGTAGACGGAGTATTATTGTACCACGGTCAGACATGGGTCAAGATTTTAAGGGCTTGTGGGAAACTGGAGTTGGTTGTGACATACTTTTCAAGGTCAAGAATGAAAGCTTTAAAGCTCATAAGTTTGTGTTATGTGACTTGAGACAGTTGGAACTGGAATCATCCTACCAAGTAATGCTTCTCTTCATTTATACGGATGAACTTCCTGATGTCTATGATGTTGTGGATTCAGTGCCACTGCCCATGTGCACACGTACTGCCATGATGCAGCATCTCTTGGCTGCTGCTGATCTGTATAATCTTGATCGTCTGAAATCATTATGCGAATCAAAATTTTGCGAAGATATCAGTACTGATACTGTTGCAACAACACTTGCACTGGCTGAGCAACACAACCGTCCCCAGCTCAAGGCCATCTGTTTAACATTTATTGTGAATCCATCAAACTTGGGAGATTATGGTAGAACTTCATTTGGAATACCACTTTACCAACACATTCCACCACTTCATCAACACACTCCATTTCCATCCCTTTTGGTTTTGCGGACGGGGAGGCTGGATGGCCAATGGTTGTTTAACCTTTTCAAAGTTTCAAAGTATACTTTCAACTGA 1149 0.4404 MSPKPSGTSELEDRLGNFKPFSESGQCCRSISETVDGSHQFTIKGYSLAKGMGAGKCRMSDTFSVGGNDWTVYFYPDGKNPEDNSTYVSVFIALASEGTGVRAFFKLTLVDQSEKGNDKVHSHFDCPLESGPYTLKYRGSVWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVQTRFEGSRRSIIVPRSDMGQDFKGLWETGVGCDILFKVKNESFKAHKFVLCDLRQLELESSYQVMLLFIYTDELPDVYDVVDSVPLPMCTRTAMMQHLLAAADLYNLDRLKSLCESKFCEDISTDTVATTLALAEQHNRPQLKAICLTFIVNPSNLGDYGRTSFGIPLYQHIPPLHQHTPFPSLLVLRTGRLDGQWLFNLFKVSKYTFN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0023 382 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 173 IPR008974 GO:0005515
Lele04g0023 382 Gene3D - 293 344 - -
Lele04g0023 382 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Lele04g0023 382 Gene3D Potassium Channel Kv1.1; Chain A 231 292 IPR011333 -
Lele04g0023 382 SUPERFAMILY POZ domain 186 294 IPR011333 -
Lele04g0023 382 SMART math_3 41 153 IPR002083 GO:0005515
Lele04g0023 382 Pfam BTB/POZ domain 235 293 IPR000210 GO:0005515
Lele04g0023 382 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 31 324 IPR045005 GO:0016567
Lele04g0023 382 CDD MATH 37 170 IPR002083 GO:0005515
Lele04g0023 382 SUPERFAMILY TRAF domain-like 33 175 - -
Lele04g0023 382 SMART BTB_4 205 295 IPR000210 GO:0005515
Lele04g0023 382 Gene3D Potassium Channel Kv1.1; Chain A 174 226 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0023 Lele-ChrLele04 126890 130039 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele04g0023 BTB 6e-06 CL0033