Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1856 ATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGAAGATGGCGGCGCCGACGCCTCTGCGTCTCCACACGCTCCTCCTCTCCCGAAGCTCAAATCTGCCATCACTGGTCGCGCTTCTTCCCCACTCGCCGGCCCTAAAAAGACCAAAGGCCGAGGCTTTCGTCAGGAAACCGATGCCAATCGTAACACCGGCCTTTCTGGGTCCGATTTCGACTCCCTAGCCGCCGAGGGTGGACCCGGTCCTCAACGATCGATTGAAGGATGGATTATTCTGGTCACGGGAGTTCATGAGGAAGCACAGGAGGATGATCTACAGAATGCATTTGGTGAATATGGAGAGATTAAGAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCACTGATCGAATATGAGCATGCTGAAGAGGCCCAAAACGCCATAGAGAATTTGAATGGATTTGAACTTCTTACTCAAACCATTTATGTGGACTGGGCTTTTAGCAGTGGACCTGTTAATGGGTCAATGAGAAGAAAGAATGCTAGGGTTTCTAGCTGTGAACCACTTGACTTGCATGTTAAGTTCTTAATGAGTATGTCATTTGAAATTCTGGAACTCTTCATCTGTGCAGACCAACGCGGGAACGACGCTCGAGGAGTCCTCGGAGGAGATATTGACTTGGATTTCAATGTAGTGATGGGATCATATCATCATCGTATCGAGATTGGGTCGGTCTCAGAAGTCTTCGCCTTCGCCTTCACCTTCACCTTCACCTTCTCTACTCTTGCTTTACTTGAAATGGAGGCCCTCTCTTGCTCTGCACTATCGTTTCCAAGGCCTTCTGATCTAGGAAGTCACTGTTCTGGTGGGTCATTTTCTGTTCTTAGGTTAGCTTTACCTTCTTCGGCTTTCTCCAAATGTCGCAGAAGAAATCGTGTTGGTGTATCCAAGGCCTCCATTGCCGTTGAGCAACAGAATCAGGAGACTAAAGTTGCTCTCATCAGAATTGGTACAAGAGGAAGTCCTCTAGCTTTGGCTCAGGCATATGAGACCAGAGACAAACTCATGGCAAAACATTCAGAGCTAGCTGAAGAGGGGGCTATTCAGATTGTAGTAATTAAAACAACAGGTGATAAAATACTATCACAACCGCTTGCGGACATAGGTGGAAAGGGCTTATTCACCAAAGAAATAGACGAGGCTCTCATAAACGGTGAAATTGACATTGCTGTACACTCAATGAAAGACGTTCCTACATACTTACCTGATAAGACTATTCTTCCATGCAACCTTCAACGTGAGGATGTAAGGGATGCTTTTATATCATTGAGTGCATCATCACTAGCTGATTTACCTGCTGGAAGCATTGTTGGAACCGCTTCCCTCAGACGAAAGTCACAGATACTCCACCGATATCCATCCCTAAATGTGCAGGAAAATTTCCGTGGCAATGTCCAAACAAGATTAAGAAAACTCAATGAGGGGGTTGTCCAAGCTACATTATTGGCATTAGCTGGACTAAAACGTCTAAATATGACAGAAAACGTGACATCAACCTTGTCAATTGATGACATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAAGTGATGATGATAAAATGGCAGAATACCTCGCTTCATTAAATCATGAAGAAACAAGACTGGCAGTTTCTTGCGAAAGGGCCTTCCTTGAGACCCTGGATGGGTCTTGCCGGACTCCCATTGCTGGATATTCTTGCAGAAAGAAGGATGGTGATTGTTTATTTAGAGGATTAGTTGCTTCTCCCGATGGAACTCGCGTTCTTGAGACATCGAGGACTGGTCCATATGCTGTTGAAGATGTGGTCAAGATGGGCAAAGATGCTGGGCAAGAGCTTCTTTCCCGGGCGGGTCCTAACTTTTTCAGTAGTTAG 1953 0.4639 MQGAAADGEAVDFEPEDDDLMDEDGGADASASPHAPPLPKLKSAITGRASSPLAGPKKTKGRGFRQETDANRNTGLSGSDFDSLAAEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEAQNAIENLNGFELLTQTIYVDWAFSSGPVNGSMRRKNARVSSCEPLDLHVKFLMSMSFEILELFICADQRGNDARGVLGGDIDLDFNVVMGSYHHRIEIGSVSEVFAFAFTFTFTFSTLALLEMEALSCSALSFPRPSDLGSHCSGGSFSVLRLALPSSAFSKCRRRNRVGVSKASIAVEQQNQETKVALIRIGTRGSPLALAQAYETRDKLMAKHSELAEEGAIQIVVIKTTGDKILSQPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPDKTILPCNLQREDVRDAFISLSASSLADLPAGSIVGTASLRRKSQILHRYPSLNVQENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSDDDKMAEYLASLNHEETRLAVSCERAFLETLDGSCRTPIAGYSCRKKDGDCLFRGLVASPDGTRVLETSRTGPYAVEDVVKMGKDAGQELLSRAGPNFFSS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1856 650 CDD PBP2_PBGD_1 342 621 - -
Lele03g1856 650 Gene3D - 563 649 IPR036803 GO:0004418|GO:0033014
Lele03g1856 650 Gene3D - 343 552 - -
Lele03g1856 650 PRINTS Porphobilinogen deaminase signature 417 436 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 PRINTS Porphobilinogen deaminase signature 386 406 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 PRINTS Porphobilinogen deaminase signature 485 502 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 PRINTS Porphobilinogen deaminase signature 465 482 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 PRINTS Porphobilinogen deaminase signature 572 589 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 SMART rrm1_1 100 173 IPR000504 GO:0003723
Lele03g1856 650 Gene3D - 444 544 - -
Lele03g1856 650 SUPERFAMILY Periplasmic binding protein-like II 342 560 - -
Lele03g1856 650 Pfam Porphobilinogen deaminase, C-terminal domain 568 640 IPR022418 GO:0004418|GO:0033014
Lele03g1856 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Lele03g1856 650 FunFam Porphobilinogen deaminase 343 446 - -
Lele03g1856 650 TIGRFAM hemC: hydroxymethylbilane synthase 343 642 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 MobiDBLite consensus disorder prediction 10 25 - -
Lele03g1856 650 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 573 589 IPR022419 GO:0004418|GO:0018160|GO:0033014
Lele03g1856 650 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 562 649 IPR036803 GO:0004418|GO:0033014
Lele03g1856 650 MobiDBLite consensus disorder prediction 1 92 - -
Lele03g1856 650 Hamap Porphobilinogen deaminase [hemC]. 342 642 IPR000860 GO:0004418|GO:0033014
Lele03g1856 650 Gene3D - 50 188 IPR012677 -
Lele03g1856 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Lele03g1856 650 FunFam Porphobilinogen deaminase 563 650 - -
Lele03g1856 650 Coils Coil 354 374 - -
Lele03g1856 650 CDD RRM_RBM8 93 180 IPR033744 GO:0003729
Lele03g1856 650 FunFam Porphobilinogen deaminase, chloroplastic 447 544 - -
Lele03g1856 650 FunFam RNA-binding protein 8A-like 30 194 - -
Lele03g1856 650 SUPERFAMILY RNA-binding domain, RBD 92 189 IPR035979 GO:0003676
Lele03g1856 650 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 343 555 IPR022417 GO:0004418|GO:0033014
Lele03g1856 650 PANTHER PORPHOBILINOGEN DEAMINASE 337 649 IPR000860 GO:0004418|GO:0033014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1856 Lele-ChrLele03 18591711 18606072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1856 101 175 Eukaryotic Initiation Factors Gene Family AT3G11400 30.667 6.93e-09 56.2