Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1827 ATGTGTGATTTCTGTGGAGAACAGAGGTCCATGGTGTATTGCCGGCCCGATGCTGCATGCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCGAGACGTCATTCGAGGACCCTAGTATGTGAGAGATGCAATTCACAACCTGCCCATGTAAGGTGTACTGAAGAGAGGATTTCACTATGTCAGAATTGTGATTGGGTGGGCCACAGTGCTTCCACATCTTTGTCAACACATAAGAGGCAAACGATCAATTGCTATTCGGGATGCCCTTCGGCTGCAGAACTTTCTTTGATATGGCCATTTGTCATGGATATTCCAACTACTGGTGAATCTTCGTGTGAGCAAGAACTTGGTATGATGAGTATTAATGAGAACAGCAACAGGGGTGCTTGGGTTCCCCCCGAAAGTCAGAATGCATCTGGCTCAGCTCAAGTAATTGATATACGCGGCATGGATAAGTCTTGTGTTGGGCCATCTTCATTGCCTGAGTCGAGCCCAAAGCCTCGTACTTTAGACCACCCAACTGGACCTGCCAACGAAAGTCTATCCAAGTTATACTGTCCCGGGACAAAAGGTTCTGGACTATATGAAGATGATGATAACATGTATGATGACTTCGACGTGGATGAAATGGACCTGAATCTTGAGAACTATGAGGAACTTTTCGGTGTGGCTCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGGATTGATAGTTTGTTCGGGACAAAAGAAACATCTGCCAGCGATTCCAATCATCAGGCCGCTGCTGAGGGGTCAATTGGACTGGTCAATACAGCGCATCCGGCATGCAGCAATGCAGCATCTGCAGATTCCATGCTAAGTACGAAAACTGAACCTATTTCCCGTTTTACTGGGAAGCAATCGCAATCAAACCTTTCATTTTCTGGTGTTACTGGAGAGAGCAGTGGTGCTGACTATCAAGATTGTGGTGCTTCTTCAATGCTTCTCACGGGGGAGCCTCCATGGTGCCCTCCATGCCCTGAGAGTTCCATGAAAGCTTCCAACCGCAGTGATGCCGTCATGCGTTACAAAGAAAAGAAGAAGACTCGCAAGTTTGAAAAAAGAGTGAGGTATGCTTCTCGCAAGGCAAGGGCTGATGTTCGAAGGCGTGTGAAGGGCCGGTTTGTTAAAGCCGGTGAAGCCTATGATTATGATCCTTTGAGTCAAACCAGAAGCTGCTGA 1221 0.4652 MCDFCGEQRSMVYCRPDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAHVRCTEERISLCQNCDWVGHSASTSLSTHKRQTINCYSGCPSAAELSLIWPFVMDIPTTGESSCEQELGMMSINENSNRGAWVPPESQNASGSAQVIDIRGMDKSCVGPSSLPESSPKPRTLDHPTGPANESLSKLYCPGTKGSGLYEDDDNMYDDFDVDEMDLNLENYEELFGVALSHSEELFENGGIDSLFGTKETSASDSNHQAAAEGSIGLVNTAHPACSNAASADSMLSTKTEPISRFTGKQSQSNLSFSGVTGESSGADYQDCGASSMLLTGEPPWCPPCPESSMKASNRSDAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1827 406 CDD Bbox1_BBX-like 2 44 - -
Lele03g1827 406 CDD Bbox1_BBX-like 44 87 - -
Lele03g1827 406 Pfam CCT motif 349 391 IPR010402 GO:0005515
Lele03g1827 406 ProSiteProfiles CCT domain profile. 349 391 IPR010402 GO:0005515
Lele03g1827 406 ProSiteProfiles Zinc finger B-box type profile. 1 44 IPR000315 GO:0008270
Lele03g1827 406 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 394 - -
Lele03g1827 406 SMART bboxneu5 1 44 IPR000315 GO:0008270
Lele03g1827 406 SMART bboxneu5 45 87 IPR000315 GO:0008270
Lele03g1827 406 ProSiteProfiles Zinc finger B-box type profile. 40 87 IPR000315 GO:0008270
Lele03g1827 406 MobiDBLite consensus disorder prediction 159 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1827 Lele-ChrLele03 17970598 17974599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1827 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 57.005 7.08e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele03g1827 zf-B_box 3.6e-05 No_clan