Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1788 ATGTACTTTTGCCGGCAAATTTTGAAATTACTTTCAAGTGCTAATGCTGGCTTTGATTTCCATGGAAGTGCGGCTGGACCTAGAATGACTTCTGGGGGCAACCTAAGTTCTGTGTCTGATTCATTGTTTCCATCCATTCATTGTCCTTGTGGTGCTGGAGCTTGCCTGATTCAAACAGCTAAAAGTGGTAAAAATTATGGCCAACAATTTTATCACTGTCCAAGAAATCAGATTCTTGCGGTTTCTTCAAGTGGTGCAATGAGAAATTACAATATGGGTGAGAAAAACAAACCAAGCTATGATTCAGCAAGTCGAGATAGAAAGGACATGGCCAAAAATGCTGATTTTTCAGACCCTCTCAGATGGGGAGAGGCAGCAGACTCGCTAAAGGGAAGCCACTTGGATGAAGTGAGAGCGATGGCGGCTGACTACTGGAGGGCCGTCGTCCATCTGGGCGGCACGAGGCTGTCGATTTCGCAGGTGGCGGCGGTGGCTAACCGGAGCTCGGGCGTGAAGGTGGTGCTATCGGAGTCGGCAAGGGCCGGCGTGAAGGCGAGCAGTGATTGGATAATGGAAAGCGTTAAGAATGGGACTCCCATCTACGGTGTCACCACTGGCTTTGGTGCTGCTTCTCACAAGCGAACGGACCAAGTCGATGCTCTTCAAAAGGAGCTTGTGAGATTCTTGAACTGTGCAATATTCGACAAGGGGAGAGAGGTAAGTCAGACTCTGCCTCAGGCAGCAAGCAGAGCAGCGATGCTTGTGAGAGTGAACACTCTGCTTCAAGGCTACTCGGGCATTCGATTTGAGATGTTGGAAGCAATCACCAAACTGCTAAACCACAAAGTCACTCCTTGCTTGCCTCTCCGGGGCACCATCACCGCCTCCGGCGATCTCATCCCTCTTTCCTACATTCTCGCTCTGCTTGTCGGCCGCCCTAACTCACAAGCCATTGGACCTTCCGGAGAGTTCCTTACTCCCCACCAAGCTTTCCATCTAGCCGGCATCAATGGCGTTAAGTTCTTTGAATTGCAGCCAAAGGAAGGCCTTGCTCTTGTGAATGGCACAGCCGTTGGATCTGGATTGGCTTCCGTGGTTCTTTTTGAAGCAAATATTTTAGCTTTATTGTCTCAGGTCACATCCGCCATTTTTGCTGAAGTAATGCATGCGAAGCCAGAATTCACTAATCATATGATTCACAATCTTAAGCACCATCCTGGGCAGATCGAAGCTGCCGCAATCATGGAATACTTTTTAGACGGTAGCTCTTATGTGAAGCAATCTCTGAAATCCCAAAAGCCTAAGAAAGAACGATATGCTCTTATAACTTCTCCTCAATGGCTAGGACCGCAGATAGAGGTCATCAGATATTGCACCAAGTCCATTGAGAGGGAGATAAACTCTGTGAACGACAATCCTTTGATTGACGTTTCAAGTAACAAGGCTTTCCATGGTGGTAATTTCCAAGGCACACCTATCGGAGTTTCAATGGACAACACTCGTTTAGCTCTAGCTTCCATAGGCAAACTTGTGTTTGCCCAGTTCACTGAGCTCGTAAACGACATGTACAACAATGGCTTGCCTTCCAATCTCTCTGCTTCTAGAAACCCAAGCTTGGATTATGGCTTTAAGGCATGTGAAGTTGCAATGGCTTCTTACTGTTCTGAACTTCAATTTTTGGCAAATCCAGTGACGAGTCATGTTCAAAGTGCAGAACATCACAACCAAGATGTCAACTCTTTGGGTCTGATTTCTGCCAGAAAAACTAGTGAGGCTATTGATATCTTGAAGCTCATGTGCTCAACTTATTTGGCTGCACTATGTCAAGCCATTGATCTGAGGCATCTGGAAGAAATCTTCATTATCATAGTCAAAAACACAATAAGTCAAGTTACAAACAAGATATTTCGATCCACAGATCAAAACCCATTTCCAGTTTGTGAAGAAGATTTACTCAAAGTGGTCGATAACGAGTATGTGTTTTCCTACATTGACGATCCCTTCAATGCTGCATTCCCATTGATGCCAAAACTCAAACAAGTTCTTTATGAGAAAGCACACAAGAATGCTGTGAAAGATCAGAGGAATAATAATGATAATGTGTTGAACAGTGCTTCAGTTTTTGACAAGATTGAAGATTTTGAGAATGAACTTAAGCTTGTTTTGCCCAGGGAAGTTGAAAAGGCAAGGGTGGATTATGAGAATGGTGAACCAGCAATTCCAAATAGAATTAAGGAGTGTAGATCATATCCATTATACAATTTTGTGAGGGAAGAGTTAAAGACTGGCTTGCTCACTGGAGAAAAGATCAAGTCACCAGATGAGGACTTTGATAAAGTGTTCCGAGCAATTTGTGAAGCAAGGATTGTTGATCCACTTTTGGAGTGCCTTGCAGATTGGAAAGGAGTTCCAATTTCAATGTAA 2424 0.4455 MYFCRQILKLLSSANAGFDFHGSAAGPRMTSGGNLSSVSDSLFPSIHCPCGAGACLIQTAKSGKNYGQQFYHCPRNQILAVSSSGAMRNYNMGEKNKPSYDSASRDRKDMAKNADFSDPLRWGEAADSLKGSHLDEVRAMAADYWRAVVHLGGTRLSISQVAAVANRSSGVKVVLSESARAGVKASSDWIMESVKNGTPIYGVTTGFGAASHKRTDQVDALQKELVRFLNCAIFDKGREVSQTLPQAASRAAMLVRVNTLLQGYSGIRFEMLEAITKLLNHKVTPCLPLRGTITASGDLIPLSYILALLVGRPNSQAIGPSGEFLTPHQAFHLAGINGVKFFELQPKEGLALVNGTAVGSGLASVVLFEANILALLSQVTSAIFAEVMHAKPEFTNHMIHNLKHHPGQIEAAAIMEYFLDGSSYVKQSLKSQKPKKERYALITSPQWLGPQIEVIRYCTKSIEREINSVNDNPLIDVSSNKAFHGGNFQGTPIGVSMDNTRLALASIGKLVFAQFTELVNDMYNNGLPSNLSASRNPSLDYGFKACEVAMASYCSELQFLANPVTSHVQSAEHHNQDVNSLGLISARKTSEAIDILKLMCSTYLAALCQAIDLRHLEEIFIIIVKNTISQVTNKIFRSTDQNPFPVCEEDLLKVVDNEYVFSYIDDPFNAAFPLMPKLKQVLYEKAHKNAVKDQRNNNDNVLNSASVFDKIEDFENELKLVLPREVEKARVDYENGEPAIPNRIKECRSYPLYNFVREELKTGLLTGEKIKSPDEDFDKVFRAICEARIVDPLLECLADWKGVPISM 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1788 807 Pfam Aromatic amino acid lyase 156 615 IPR001106 -
Lele03g1788 807 CDD PAL-HAL 156 614 IPR001106 -
Lele03g1788 807 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 291 307 IPR022313 GO:0016841
Lele03g1788 807 Pfam GRF zinc finger 47 76 IPR010666 GO:0008270
Lele03g1788 807 SUPERFAMILY L-aspartase-like 118 805 IPR008948 GO:0003824
Lele03g1788 807 FunFam Phenylalanine ammonia-lyase 109 356 - -
Lele03g1788 807 Gene3D - 617 742 IPR023144 -
Lele03g1788 807 PANTHER HISTIDINE AMMONIA-LYASE 112 806 IPR001106 -
Lele03g1788 807 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 118 797 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lele03g1788 807 Gene3D Fumarase/aspartase (Central domain) 357 802 - -
Lele03g1788 807 Gene3D - 110 356 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1788 Lele-ChrLele03 15889562 15894574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1788 108 805 Monolignol Biosynthesis Gene Families AT2G37040 68.175 0.0 991