Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1781 ATGGGCTCCCGGAAGGGTGACAATCCTTACCCCGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGCTAGCAAGAGATACAACATTCGAACAATTCGTCAGGTATTTTGAGAAGTATGGGGAGATAACAGATTCGGTGATAATGAAAGATCGGCATACGGGTCGACCTAGGGGTTTCGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCACGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTGGAGATCAAAAGGACAATACCAAAGGGCTCATCACAGGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCAACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGAATGGTTGTGGAGCATGAGATCATTCGTGATCATACTACTAAACGCTCTCGAGGATTTGGATTTATAGTGTTTGACACTGAAAAAATTGTTGATAATTTGCTGGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACTCAACATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCGGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTACGGTGGGTATGGTGGTGATGAGTATGGGGATAGTTTTGGAGGCTATGGTGGTGGTGGAGGTGGTTTTTCTGGGTATCGAGGTGATTCATCATTTGACTATTCTAGTCGCTATGGTTCCTATATGGGGGGCCTTGGTGATGGATATGGTGGAAGTGGACTAGGGGCATACGGGCGAGGCGCTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGCTATGGTGGGCCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGTAGGAGTCGTTACCACCCTTATGCAAGATAG 1047 0.468 MGSRKGDNPYPGDGASPGKIFIGGLARDTTFEQFVRYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGMVVEHEIIRDHTTKRSRGFGFIVFDTEKIVDNLLANGNMIDMAGTQVEIKKAEPKKASNSTSFPPFGSDRARPYSDGYGGFGESYSGFGSGSFGPASYRSLGGFGSRLGDYGGYGGDEYGDSFGGYGGGGGGFSGYRGDSSFDYSSRYGSYMGGLGDGYGGSGLGAYGRGAGGFASYGGPGSGGGYDSGPGAGYGGPGALYGSRGGYGGRSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1781 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Lele03g1781 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Lele03g1781 348 Gene3D - 97 223 IPR012677 -
Lele03g1781 348 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Lele03g1781 348 Gene3D - 18 96 IPR012677 -
Lele03g1781 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Lele03g1781 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Lele03g1781 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lele03g1781 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Lele03g1781 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lele03g1781 348 SUPERFAMILY RNA-binding domain, RBD 100 213 IPR035979 GO:0003676
Lele03g1781 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Lele03g1781 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 6 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1781 Lele-ChrLele03 14936902 14939044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1781 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 25.397 6.85e-12 64.7