Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1763 ATGTATGTGCAGGCTGATGTGGGAGTCTTGCAGTTTCAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAAAAGGCATTGCACGACCTTGAAGTAAAAATCAGAGATTTAAAATGCAGGCAAAATTCATATGATGACATGATAATTGCAGTAAACGAACTCTGGAGTCAGTTGGTTGATCATCTGATCCTTCTTGGAATACGAGCTGGGGGAGGCCAAAATGCATTTAAAAATTTGGAGCACCCTGGTAATCCTCAAGATTCACTTTCTTTGTGTCCGGTGGAGGATATCTTCCTTTCCAGATTAATACAGAAAGATTTCATTGAAACCAACACTCAAAATGAGGTCATTAACTTTGTTGAGGAAGCTCTTGCTCTGCGTCAGTCATCTACGAGGGAGTTATTGAAACTTCTTGATTATACCATTGATGCTCAGATTGAAAGAACTTACTGTATTGCCCAGGGTTTGGAAGGGTCAACTTCAGAAGATGCTATCATTCAAATGTCTAAGATTGATGATATGATGAAAGAGGAGGCTAACAGTTGGCATGAAGTAATCTATGCTCTCCATGTCAAGCATAAAGATTATGCTGTTGCTATTGAAAATTATGTTAGCTGCCAGTTACAGGATCAATCTGAGATTAAACGCATAGCAGGTGAACTTGATGAAAGCATGACTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATCTGAAAATGCAGAAAGATGCAGCAATAGGGATGCAGTCACCTGGTTCAGAAGCAGTTAATGGGACATTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTTCGCGAGTTGAAAGATTCAATAGAGGAAGCAAAGATAGTGGCCACTGACCGTCTTTCAGAGCTTCAAGAAGCACAGGAAGACAATCTGACCTTGAGAGGGCATTTGCAGGATCTTCAGAATGAATTGACTGATGACAAATATGTACGTTCATCCCGACTGTATTCTTTGGTAAATGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATACAGCATTGGCAGAGTCTCTGCAGGCTGAAAGGGTCCATGTCATGAAATGGGAAAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTGCTGTTGACAATTCTGACTGTAGGATTGAAGAGCTAGAGCTTCAGTTGCAAAAGTGTACTATTGAAAAGAACGATATTGAAATAGAGATGGAAGAAGCTATACAGGATACTGGGAGAAAAGATATTAATTCTGAGTTTCATGTCATGGCTTCAGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCGGTTTCCTTACGTGAGAAAGCACATTCACTAAGATCTTTGTTAAGTGGGAAGAATCTCTCATTGGGGATGACGATTGGCACAACTAAGGAATATGAGGGGCTCTACTACCTTGATGCTTTTACTACAAGTGAAATCAAAACCTTAGCAAACAAATGTTCTGAGCAGGCCGTGGAGATAAAATCTTTAAAAACATTGATTGAAAAGCTGCAGAAGGAAAAAATGGAATTACAATTCTTTCTGGACTTGCATGGACAGGAGAATCATGAAAAAAGAGGTTCGCTAGAAATCATAGAATCAGAAAGTAAAGCTCTAGCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAGAATAGTTTAGAGTTGAGGGTAAAAGCTGCCTATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCAGAAGCTGAGATAGAGGATCTAAGGGCCAAGCTGGAAGCTTCTGAAGGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTCAAAGATGCTGAGTCAGAGGCTTATATATCTGAAATTGAGACTATTGGACAAGCATATGAAGATATGCAGACTCAGAACAAACATCTATTGCAGCAGGTGACAGAGAGGGATGACTATAATATCAAGCTTGTTTCAGAGAGCTTAAAGACAAAACAGGCACATAGCATTTTACTCTCTGAGAAGCAGGCCTTAGCAAAGCAGCTTCAACAAATTAACGCTTCAATAGAAACTTTAAAGATGAGGATTACACACAGTGAAGACCAGATGAAAGCTCTTTTATCGGAAGCCATTAAATATACTCAAGAGGAAAAACACCTTGCAGTTACCCTGGAATCTGCAAAATGGGAATTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTTAAGTCCACTGTTACTTCTTCTGATAAAGAGTATGATCAAATTCAGAAAGACTTGGAAGCTATCCAAATTGAGTTGGAAATTGAAAGGAGTTCAAAACAGAAGCTTGAGGAAGAACTCAAGGAATTAAACTGCAAAATTGATGACCTGAGTTCCGAAACTGGAGAGACAGCAATACAAAAGCTACACGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACCGTTTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGTTATCATCTGTTCTGCAATCCATGTATTCAGAGAAACTTAGAACTCCGTCATCGCAAGTGTCCTGCCTGTGGAACTGCTTTTGGTCAGAGTGATGTTCGGTTTGTGAAAATATGA 2616 0.4006 MYVQADVGVLQFQNQQLVQQIDLQKKALHDLEVKIRDLKCRQNSYDDMIIAVNELWSQLVDHLILLGIRAGGGQNAFKNLEHPGNPQDSLSLCPVEDIFLSRLIQKDFIETNTQNEVINFVEEALALRQSSTRELLKLLDYTIDAQIERTYCIAQGLEGSTSEDAIIQMSKIDDMMKEEANSWHEVIYALHVKHKDYAVAIENYVSCQLQDQSEIKRIAGELDESMTELEESRRKLVNLKMQKDAAIGMQSPGSEAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVATDRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVRSSRLYSLVNDQLQHWNTELERYTALAESLQAERVHVMKWEKELNSKLESADTARLAVDNSDCRIEELELQLQKCTIEKNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSGKNLSLGMTIGTTKEYEGLYYLDAFTTSEIKTLANKCSEQAVEIKSLKTLIEKLQKEKMELQFFLDLHGQENHEKRGSLEIIESESKALAQAEVLKNALDENSLELRVKAAYEAEAAYEQRLSAAEAEIEDLRAKLEASEGDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVTERDDYNIKLVSESLKTKQAHSILLSEKQALAKQLQQINASIETLKMRITHSEDQMKALLSEAIKYTQEEKHLAVTLESAKWELADAEKELKWLKSTVTSSDKEYDQIQKDLEAIQIELEIERSSKQKLEEELKELNCKIDDLSSETGETAIQKLHDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1763 871 Pfam Zinc finger, C3HC4 type (RING finger) 818 860 - -
Lele03g1763 871 SUPERFAMILY RING/U-box 815 868 - -
Lele03g1763 871 Coils Coil 756 797 - -
Lele03g1763 871 Coils Coil 548 568 - -
Lele03g1763 871 ProSitePatterns Zinc finger RING-type signature. 834 843 IPR017907 -
Lele03g1763 871 Coils Coil 14 41 - -
Lele03g1763 871 MobiDBLite consensus disorder prediction 250 270 - -
Lele03g1763 871 PANTHER RING FINGER PROTEIN-RELATED 6 871 IPR013956 GO:0004842|GO:0010390
Lele03g1763 871 Coils Coil 574 615 - -
Lele03g1763 871 Coils Coil 372 413 - -
Lele03g1763 871 Coils Coil 277 314 - -
Lele03g1763 871 Coils Coil 728 748 - -
Lele03g1763 871 SMART ring_2 819 857 IPR001841 -
Lele03g1763 871 Coils Coil 503 523 - -
Lele03g1763 871 Coils Coil 334 354 - -
Lele03g1763 871 CDD RING-HC_BRE1_like 817 858 - -
Lele03g1763 871 ProSiteProfiles Zinc finger RING-type profile. 819 857 IPR001841 -
Lele03g1763 871 Coils Coil 679 713 - -
Lele03g1763 871 Coils Coil 215 242 - -
Lele03g1763 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 800 870 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1763 Lele-ChrLele03 13800275 13836009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1763 793 866 RAD5 or RAD16-like Gene Family AT5G05130 26.506 3.28e-07 52.4